Fragment length distribution: mean=0, stdev=1 Fragment distance limit: 2, read distance limit: 200 warning[vg::giraffe]: Falling back on single-end mapping 没有搞明白是什么原因 欢迎大家关注我的公众号 小明的数据分析笔记本 小明的数据分析笔记本 公众号 主要分享:1、R语言和python做数据分析和数据可视化的简单小例子;2、园艺植物相关转录组学、基因组学、...
We adopted the case–control GWAS strategy, which was widely used in disease gene mapping for humans30,31, to identify SVs that were substantially associated with different morphotypes ofB. oleracea. Briefly, a GWAS analysis was performed between the case group (individuals belonging to a specific ...
We adopted the case–control GWAS strategy, which was widely used in disease gene mapping for humans30,31, to identify SVs that were substantially associated with different morphotypes of B. oleracea. Briefly, a GWAS analysis was performed between the case group (individuals belonging to a specifi...
Mapping regulatory variants controlling gene expression in drought response and tolerance 笔记 。作者首先对 abh2基因中的SNP位点进行了GWAS分析,发现其中与表达量显著相关的位点要么是同义突变,要么是非编码区突变,符合预期,因为蛋白结构的改变很难通过表达量GWAS挖掘... -log (p-value) 随干旱压力增加而逐渐变强...
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Eu-Ahsunthornwattana,J., et al. (2014) Comparison ofmethods to account for relatedness in genome-wide association studies withfamily-based data, PLoS Genet,10, e1004445. Gamazon, E.R., et al. (2015) A gene-based associationmethod for mapping traits using reference transcriptome data, Natu...
Python akcorut/kGWASflow Star31 Code Issues Pull requests kGWASflow is a Snakemake workflow for performing k-mers-based GWAS. workflowbioinformaticsgwassnakemakepipelinegenomicsngscondabioinformatics-pipelinestructural-variationgwas-pipelinebioinformatics-toolgwas-toolskmerssciworkflowsassociation-mapping ...
Python akcorut/kGWASflow Star37 Code Issues Pull requests kGWASflow is a Snakemake workflow for performing k-mers-based GWAS. workflowbioinformaticsgwassnakemakepipelinegenomicsngscondabioinformatics-pipelinestructural-variationgwas-pipelinebioinformatics-toolgwas-toolskmerssciworkflowsassociation-mapping ...
While GWAS can identify broad genomic regions associated with the trait, it doesn't pinpoint the exact causal variant within those regions. Fine mapping, working in the opposite direction of that of the gene-based approaches, is a process aimed at narrowing down and identifying causal variants,...
Large-scale GWAS studies have uncovered hundreds of genomic loci linked to facial and brain shape variation, but only tens associated with cranial vault shape, a largely overlooked aspect of the craniofacial complex. Surrounding the neocortex, the crania