round-off error in the derivative calculation. The derivative is computed using a 5-point rule for equally spaced abscissae at x − h, x − h/2, x, x + h/2, x + h, with an error estimate taken from the difference between the 5-point rule and the corresponding 3-point rule x...
Options:-h displaythishelp-i [file name] input file-o [stem] output stem (will be [stem].treeout.gz, [stem].cov.gz, [stem].modelcov.gz)-k [int] number of SNPs per blockforestimation of covariance matrix (1)-globalDo a round ofglobalrearrangements after adding all populations-tf [...
[stem].cov.gz, [stem].modelcov.gz)-k [int] number of SNPs per blockforestimation of covariance matrix (1)-globalDo a round ofglobalrearrangements after adding all populations-tf [file name] Read the tree topologyfroma file, rather than estimating it-m [int] number...