Initially the VGVI was developed in python, later Brinkmann & Labib, (2022) created an R package GVI for fast calculation of the VGVI model. The visibility functions available in GreenExp package are from GVI package with some adaptations. Note: VGVI model needs LiDAR driven Digital Surface...
Maximum-likelihood analyses were conducted using the edge-linked partition model of IQ-TREE 1.6.171,72. The datasets were partitioned by gene, with the model applied to each partition. The optimal amino acid substitution model for each gene, partitioned by the datasets, was selected according ...
Finally, we used the SOWH test, implemented in SOWHAT65, to investigate whether the inferred tree topology (phytochrome portion of neochrome forming a clade) is significantly better than the alternative topology (neochrome not monophyletic). In SOWHAT, we used the default stopping criterion and ...
Interactive Tree Of Life (iTOL) v4: recent updates and new developments. Nucleic Acids Res. 2019;47:256–9. https://doi.org/10.1093/nar/gkz239. Article Google Scholar Mcguinness LM, Salganik M, Vega L, et al. Replicability of Bacterial Communities in Denitrifying Bioreactors as Measured ...