Results: We present ALFRED-G, a greedy alignment-free distance estimator for phylogenetic tree reconstruction based on the concept of the generalized ACS approach. In this algorithm, we have investigated a new
Ignacio Blanquer a cInformation SciencesAlic, A.S.; Tomas, A.; Medina, I.; Blanquer, I. Muffinec: Error correction for de novo assembly via greedy partitioning and sequence alignment. Inf. Sci. 2016, 329, 206-219. [CrossRef]Alic, A. S., Tomas, A., Medina, I. & Blanquer, I. ...
MicroRNAs (miRNAs) and long non-coding RNAs (lncRNAs) are both non-coding RNAs (ncRNAs) and their interactions play important roles in biological processes. Computational methods, such as machine learning and various bioinformatics tools, can predict potential miRNA–lncRNA interactions, which is sign...
Alignment-free sequence comparison approaches have been garnering increasing interest in various data- and compute-intensive applications such as phylogenetic inference for large-scale sequences. While k-mer based methods are predominantly used in real applications, the average common substring (ACS) appr...