GO:0000003 biological_process reproduction 2 GO:0002376 biological_process immune system process 1 GO:0003824 molecular_function catalytic activity 273 GO:0005198 molecular_function structural molecule activity 49 GO:0005215 molecular_function transporter activity 24 GO:0005488 molecular_function binding 189 G...
GO0019882[label = "GO:0019882\nantigen processing and presentation"]; GO0002376[label = "GO:0002376\nimmune system process"]; GO0008150[label = "GO:0008150\nbiological_process"]; GO0002484 -> GO0002485; GO0019885 -> GO0002484; GO0002474 -> GO0019885; GO0048002 -> GO0002474; GO0019882 -...
> data(gcSample) > yy <- groupGO(gcSample[[1]], 'org.Hs.eg.db', ont="BP", level=2) > yy GO BP Profiles at level 2 of 216 Homo sapiens genes > head(as.data.frame(yy)) ID Description Count GeneRatio GO:0000003 GO:0000003 reproduction 15 15/216 GO:0002376 GO:0002376 immune...
4 mc00002 GO:0002376 IEA 5 mc00002 GO:0003006 IEA 6 mc00002 GO:0003674 IEA 1.3.3. 提取注释的KEGG信息 从egg中提取KEGG注释并整理成gene2pathway.txt文件 提取KEGG信息 koterms <- egg %>%dplyr::select(GID = query, KO=KEGG_ko)%>%na.omit()%>% filter(str_detect(KO,"ko")) #根据egg第...
This protein is annotated with 36 GO terms in UniProt, among which only 6 GO terms, GO:0006955, GO:0002376, GO:0005615, GO:0008083, GO:0005125, and GO:0005129, were confidently predicted by Phylo-PFP. The Fmax score of the GO prediction was 0.2, due to the small coverage of correct ...
This protein is annotated with 36 GO terms in UniProt, among which only 6 GO terms, GO:0006955, GO:0002376, GO:0005615, GO:0008083, GO:0005125, and GO:0005129, were confidently predicted by Phylo-PFP. The Fmax score of the GO prediction was 0.2, due to the small coverage of correct ...
system (GO:0002376), response to stimulus mechanisms (GO:0050896), the metabolic pathways (GO:0001852), as well as regulation of transcription (GO:... MS Shuhada,CR Marshall,ME Phipps,... - 《Plos One》 被引量: 9发表: 2014年 青枯病菌侵染后花生基因表达谱分析 80%的基因集中于2-4倍表达...
GO:0002376 immune system process biological_process 5 3384 9842 GO:0015976 carbon utilization biological_process 6 3384 9842 GO:0040007 growth biological_process 13 3384 9842 GO:0051704 multi-organism process biological_process 43 3384 9842 GO:0000003 reproduction biological_process 52 3384 9842 ...
clusterProfiler 是业界大神Y叔写的一个R包,可以用来做各种富集分析,如GO、KEGG、DO(Disease Ontology analysis)、Reactome pathway analysis以及GSEA富集分析等。而除了富集分析,他还可以非常方便的对富集分析结果进行可视化。 这里使用clusterProfiler进行GO、KEGG以及GSEA富集分析。