GNU Parallel for Bioinformatics.This document follows Ole Tange's parallel tutorial http://www.gnu.org/software/parallel/parallel_ tutorial.html. The sources of this document are available at https://github.com/lindenb/courses/tree/master/ about.parallelPierre Lindenbaum
Install usinggo get github.com/mylanconnolly/parallelor some other means. Simple usage The most straightforward usage would be: #Want to calculate the MD5 sum of every file in /etc?$ find /etc -type f|parallel md5sum#Want to only use two workers for the same thing?$ find /etc -type ...
GPL-2.0 license coshell v0.2.5 A no-frills dependency-free replacement for GNU parallel, perfect for initramfs usage. Licensed under GNU/GPL v2. How it works Ansh -c ...command is started for each of the input commands; environment and current working directory are preserved.NOTE:file des...
您可以从Git官方网站(https://git-scm.com/downloads)下载并安装最新版本的Git。 安装GNU并行:GNU并行是一个用于并行执行任务的工具集。您可以从GNU并行的官方网站(https://www.gnu.org/software/parallel/)下载并安装最新版本的GNU并行。 配置环境变量:将GNU并行的安装路径添加到系统的环境变量中,以便在任何...
parallel_tutorial(7) pcap-filter(7) pcap-linktype(7) pcap-tstamp(7) PCK(7) pck(7) pf(7) pf.conf(7) pf.os(7) phys_up(7) pkcs11_kmip(7) pkcs11_kms(7) pkcs11_parse_uri(7) pkcs11_softtoken (7) pkcs11_tpm(7) pkg(7) POSIX.1(7) POSIX.2(7) POSIX(7) privileges(7) pr...
man parallel_tutorial 当然也可以用conda来安装,更多请参考官方文档。 简单的栗子 下面用一个简单的例子介绍一下Parallel的用法:在这个例子中,有10个蛋白质序列文件,我们想要用相同的选项运行blastp。使用下面的parallel并行命令,我们将一次对两个文件运行blastp,并为每个文件分配1个线程。
a graph and tune into the center of the range I was interested in and somehow channelize it. The remaining steps are required to format the data to allow MultiMonNG to process that audio stream. This is done a couple times depending on how many you want to decode in parallel. Have fun...
and research purposes which all arefree software. I tried to pick up choices as simple as possible here just to represent every basic category and further I hope you could see more alternatives if you want. I also listed several specific tools likeGNU OctaveandParallelwhich are proven to be ...
this program is inspired by the functionality of GNU parallel, but tries to keep low overhead and follow the UNIX philosophy of doing one thing well. how it works basically, it works by processing stdin, launching one process per line. the actual line can be passed to the started program ...
Tutorial This section will guide the user through the selection of taxa, application ofDFOILin parallel, and subsequent visual summaries of results conducted for Lambert et al. (submitted) step-by-step. It is divided into three major stages:1) Selection of Taxa;2) Execution of DFOILusing GNU...