GMrepois freely accessible at:https://gmrepo.humangut.info/home. In addition to the online database,GMrepoalso provides programmable access to most of the database contents through RESTful APIs. Below please find example codes for a few languages that we use in our lab; users who are using ...
The data.frame phenotypes in the retrieved list all_phenotypes (can be accessed using all_phenotypes$phenotypes) contains a list of phenotypes and related statistics as shown in https://gmrepo.humangut.info/phenotypes. Get statistics on a phenotype Using the corresponding MeSH ID (e.g. D006262...
GMrepo (data repository for Gut Microbiota) is a database of curated and consistently annotated human gut metagenomes. Its main purposes are to increase the reusability and accessibility of human gut metagenomic data, and enable cross-project and phenotype comparisons. To achieve these goals, we pe...
GMrepo数据库是一个带有注释的人类肠道宏基因组的数据库。其主要目的是促进快速增长的人类宏基因组学数据的可重用性发展和研究,通过使用最新的工具注释所收集样品的微生物含量,以及通过手动管理相应人类宿主的宏数据来实现数据整理。GMrepo还配备了自定义查询图形生成器,可以进行各种复杂的生物学相关的查询。包含来自253个...
GMrepo数据库地址:https://gmrepo.humangut.info GMrepo数据库工作流程: GMrepo中包含的前10种表型: GMrepo数据库界面: 通过实例学习GMrepo数据库的使用: 1. 与抑郁(Depression)相关的肠道微生物菌群 搜索Depression,查询到抑郁相关的肠道微生物菌群结果:
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