gkm-SVM consistently outperforms kmer-SVM and the best known PWM on human ENCODE ChIP-seq data sets.Mahmoud GhandiDongwon LeeMorteza MohammadNooriMichael A. Beer
FastSK: fast sequence analysis with gapped string kernels (Fast-GKM-SVM)This Github repo provides improved algorithms for implementing gkm-svm string kernel calculations. We provide C++ version of the algorithm implementation and a python wrapper (making to a python package) for the C++ implementatio...
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gkm-SVM outperforms kmer-SVM over a wide range of k-mer length.Mahmoud, GhandiDongwon, LeeMorteza, MohammadNooriMichael, A. Beer
Comparison of gkm-SVM and existing methods on the mouse forebrain EP300 data set.Mahmoud, GhandiDongwon, LeeMorteza, MohammadNooriMichael, A. Beer