UpdatedNov 17, 2024 Shell Add a description, image, and links to theunicyclertopic page so that developers can more easily learn about it. To associate your repository with theunicyclertopic, visit your repo's landing page and select "manage topics."...
Unicycler was initially made in 2016, back when long reads could be sparse and very noisy. For example, our early Oxford Nanopore sequencing runs might generate only 15× read depth for a single bacterial isolate, and most of the reads had alotof errors. So Unicycler was designed to use lo...
modules/nf-core/unicycler/tests/main.nf.test Outdated Show resolved Update modules/nf-core/unicycler/tests/main.nf.test … dca07c9 ngspp commented Apr 30, 2024 @maxulysse as fast as lightning there 🚀 2 Sorry, something went wrong. Contributor Author FloWuenne commented Apr 30,...
Add multiqc,unicycler, update to use click b2c6267 cokelaer force-pushed the main branch from 68ae479 to b2c6267 Compare November 29, 2023 09:07 View details cokelaer merged commit dd9005f into sequana:main Dec 16, 2023 1 check failed Update pyproject 732f12b Sign up for free to...
In case anyone still runs into this issue, I thought I'd mention that in the upcoming version of Unicycler (v0.5.0), I've removed the--spades_tmp_diroption because there is now the more general--spades_optionswhich lets you pass any option to SPAdes. ...
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics - added dockerfile for unicycler 0.4.8 and updated README. Fixes #142 · StaPH-B/docker-builds@6664e30
#Download Unicycler test data#input: nothing#output: 0_pe.fq.gz#install dependenciesbrew install seqtk curl seqtk mergepe<(curl -Ls https://github.com/rrwick/Unicycler/raw/master/sample_data/short_reads_1.fastq.gz)<(curl -Ls https://github.com/rrwick/Unicycler/raw/master/sample_data/short...
kb_unicycler Public Python 0 MIT 2 0 1 Updated Jan 23, 2025 DataFileUtil Public Python 0 MIT 12 10 3 Updated Dec 9, 2024 GenomeFileUtil Public Python 0 MIT 16 3 2 Updated Nov 1, 2024 kb_fasttree Public Python 0 MIT 2 0 8 Updated Nov 1, 2024 kb_quast Public KBase...
I've put a fix (1800212) into the new version of Unicycler (v0.5.0). Ryan rrwick closed this as completed Jan 22, 2022 galaxychan commented Jul 4, 2022 Hi, thanks a lot for this issues discussion. I use the new version 0.5.0 ('unicycler==0.5.0') but still got the this ...
Projects1 Security Insights Additional navigation options main BranchesTags 27branches0tags Go to file Code Clone HTTPSGitHub CLI Download ZIP Latest commit 3 authorsUnicycler add rerun use modified graph (#5656) c1cd9b7Dec 19, 2023 Git stats ...