gffutils包 gffutils是一个用于解析gff3/gtf格式的python包,读取gff3文件非常方便,利用这个包实现对基因结构注释文件重新命名python脚本如下 #!/usr/bin/env python# -*- coding: utf-8 -*-importreimportsysimportargparseimportloggingimportgffutilsfromcollectionsimportdefaultdictdefrename(args):seqid2name=dict()fo...
gffutils is a Python package for working with and manipulating the GFF and GTF format files typically used for genomic annotations. Files are loaded into a sqlite3 database, allowing much more complex manipulation of hierarchical features (e.g., genes, transcripts, and exons) than is possible ...
在下文中一共展示了create_db函数的7个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的Python代码示例。 示例1: test_delete ▲点赞 6▼ deftest_delete():db_fname = gffutils.example_filename("gff_example1.gff3")# incrementally delete...
gffutils是一个Python软件包,用于处理和处理通常用于基因组注释的GFF和GTF格式文件。 文件被加载到sqlite3数据库中,与仅使用纯文本方法相比,可以对层次结构特征(例如,基因,转录本和外显子)进行更为复杂的操作。 请参阅文档。点赞(0) 踩踩(0) 反馈 所需:15 积分 电信网络下载 ...
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在下文中一共展示了gffutils.create_db方法的15个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的Python代码示例。 示例1: create_feature_db_connections ▲点赞 6▼ # 需要导入模块: import gffutils [as 别名]# 或者: from gffutils importcr...
New issue smoewants to merge1commit intodaler:masterfromsmoe:patch-1 smoecommentedJan 26, 2021 DeprecationWarning: invalid escape sequence \w 3cebbc4 dalerclosed thisJan 24, 2022 Sign up for freeto join this conversation on GitHub. Already have an account?Sign in to comment ...
()) File "/slurm/home/zju/zhanglab/chenquanyu/mambaforge/envs/liftoff/lib/python3.10/site-packages/lifton/lifton.py", line 352, in main run_all_lifton_steps(args) File "/slurm/home/zju/zhanglab/chenquanyu/mambaforge/envs/liftoff/lib/python3.10/site-packages/lifton/lifton.py", line 290...
在下文中一共展示了example_filename函数的15个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于系统推荐出更棒的Python代码示例。 示例1: test_valid_line_count ▲点赞 6▼ deftest_valid_line_count():p = iterators.FileIterator(example_filename('ncbi_gff...
daler/gffutilsPublic NotificationsYou must be signed in to change notification settings Fork78 Star289 master 21Branches15Tags Code Folders and files Name Last commit message Last commit date Latest commit daler update setup.py to reflect supported python versions ...