pip install git+https://github.com/altairwei/PyGFF.git How to use gfftools gfftoolscontains a series of subcommands, includesstats,conv,filterandseq. Filter GFF features with given conditions Match specified fields We can specify multiple fields of the same type, and as long as the feature ...
Perl scripts for working with the GFF format. Contribute to ihh/gfftools development by creating an account on GitHub.
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2sourceUsually the program that generated the data (e.g.blastp,AUGUSTUS) 3typeType of feature (e.g.gene,exon), typically usingstandarized terms 4startFirst base in the feature 5endLast base the feature 6scoreFloat (of an arbitrary scale), could be something like coverage (say 0-1000),...
Last commit message Last commit date Latest commit Cannot retrieve latest commit at this time. History 30 Commits Sort LICENSE README.md check-disorder.pl gff3sort.pl README GPL-3.0 license GFF3sort A Perl Script to sort gff3 files and produce suitable results for tabix tools ...
Despite >90% of BUSCOs being matched in a genome, the buso_output.gff file is empty. I'm not sure why this cat command doesn't get the contents of the .gff files. The path looks fine and the run_*/busco_sequences folder seems to be there...
A similar change should be done to theDLS2version of the bedtools module in line 24 ofmodules/nf-core/bedtools/main.nf, but I haven't tested it. Thanks, Ido Activity Sign up for freeto join this conversation on GitHub.Already have an account?Sign in to comment...
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master BranchesTags Code Folders and files Name Last commit message Last commit date Latest commit History 212 Commits jbrowse misc test_data README.md alignmentpos2gff.py blast2genomegff.py blast2gff.py clean_gff.py collate_features.py