用GSDS构建启动子元件图出现Error: BED file parsing error. Error: GFF file parsing error. Error...
因为用gffutils.createdb()创造数据库文件时,若已存在databasename,则会抛出sqlite3.OperationalError。但如果你想生成数据库文件时覆盖已存在的文件可以通过gffutils.createdb(gfffilename, database_name,force=True)设置参数force=True来强制覆盖已存在的文件 成功生成或加载数据库文件后,可以查看gff文件中包含那些特征typ...
The same line seems to work with human and mouse gff3 from ensembl, at least for the parsing gff3 part. After searching a bit I arrived to the conclusion that the identifiers used for plants (the same problem arose with rice gff3) are not compatible with csq gff3 parser. Is it possib...
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File Parsing problem 0 Problem with GFF parser by BCBio 0 extract data from gb file using biopython Load 7 more related questionsShow fewer related questions Know someone who can answer? Share a link to thisquestionviaemail,Twitter, orFacebook. ...