Homoeolog retention is significantly above the average genome-wide retention rate for wheat genes, indicating that many MIKC-type homoeologs are functionally important and not redundant. Gene expression is generally in agreement with the expected subfamily-specific expression pattern, indicating broad ...
primordia for a transcriptomic assay. Subsequently, we identified MADS-box genes from the RNA-seq and genome data and performed a genome-wide analysis of these genes in terms of phylogenetic trees, exon/intron structures, conserved motif distributions, and chromosomal locations. Finally, we examined ...
Finally, RNA-seq transcriptome data and quantitative real-time PCR analysis revealed that BrMADS genes are expressed in a tissue-specific manner similar to Arabidopsis. Interestingly, a number of BrMIKC genes showed responses to different abiotic stress treatments, suggesting a function for some of ...
Genome-Wide Analysis of MIKC[supC]-Type MADS Box Genes in Grapevine. MIKC[supC]-type MADS box genes encode transcription factors that play crucial roles in plant growth and development. Analysis of the grapevine ( Vitis vini... Díaz-Riquelme,José,Lijavetzky,... - 《Plant Physiology》 ...
Although the genome-wide analysis of this family has been performed in some species, little is known regarding MADS-box genes in apple (Malus domestica). In this study, 146 MADS-box genes were identified in the apple genome and were phylogenetically clustered into six subgroups (MIKCc, MIKC*...
MAGMA: generalized gene-set analysis of GWAS data. PLoS Comput Biol. 2015;11:e1004219. https://doi.org/10.1371/journal.pcbi.1004219. Article CAS PubMed PubMed Central Google Scholar Network & Pathway Analysis Subgroup of Psychiatric Genomics, C Psychiatric genome-wide association study analyses...
We report here a genome-wide analysis of the MADS-box gene family in Brachypodium distachyon. We identified 57 MADS-box genes and classified them into 32 MIKC(c)-type, 7 MIKC*-type, 9 Mα, 7 Mβ and 2 Mγ MADS-box genes according to their phylogenetic relationships to the ...
Expression analysis of 89 MIKCc and 11 MIKC* genes was then carried out. In addition to those with floral and vegetative tissue expression, we identified MADS-box genes with constitutive expression patterns at different stages of flower development. More importantly, from a low temperature-treated...
(Ziziphus jujubaMill.) is still missing. Here, we report a genome-wide analysis of the MADS-box gene family in Chinese jujube. Based on phylogenetic analyses, 52 jujube MADS-box genes were classified into 25 MIKCC-type, 3 MIKC*-type, 16 Mα, 5 Mβ and 3 Mγ genes. 37 genes were...
(C) Go clustering analysis of DMGs. Annotations are grouped by molecular function or biological process based on the rice GO annotation information. genebody and downstream revealed that the hypermethylation or hypomethylation occurred specifically for the vast majority of the genes, and very few ...