Raw sequence dataINSDCIn the 2017 first issue of this Journal–Genomes,Proteomes and Bioinformatics–a special database article entitled''GSA:Genome Sequence Archive'[1]is published.This article provides a brief introduction to the platform developed by the authors from the BIG Data Center(BIGD)...
NyuWa samples used in this study have been deposited in the Genome Sequence Archive (GSA) in National Genomics Data Center, China National Center for Bioinformation/Beijing Institute of Genomics, Chinese Academy of Sciences, under accession number HRA004185 (https://ngdc.cncb.ac.cn/gsa-human/)...
In the 2017 first issue of this Journal–Genomes,Proteomes and Bioinformatics–a special database article entitled''GSA:Genome Sequence Archive'[1]is published.This article provides a brief introduction to the platform developed by the authors from the BIG Data Center(BIGD)of Beijing Institute of...
image.png The Genome Sequence Archive for Human (GSA-Human), as a part ofGSAin the National Genomics Data Center, is a data repository specialized for human genetic related data derived from biomedical researches. Aside from basic data archive services, GSA-Human features: • Specializing in h...
To address this issue, here we present Genome Sequence Archive (GSA; http://bigd.big.ac.cn/gsa or http://gsa.big.ac.cn), a data repository for archiving raw sequence data. As a core database resource of BIG Data Center [11] (http://bigd.big.ac.cn), GSA is built based on IN...
GSA: Genome Sequence Archive. Genomics Proteomics Bioinformatics. 2017;15:14–8. Article PubMed PubMed Central Google Scholar Boyang Shi, Jinsong Zhang, Jian Heng, Jing Gong, Ting Zhang, Pan Li, Bao-Fa Sun, Ying Yang, Ning Zhang, Yong-Liang Zhao, Hai-Lin Wang, Feng Liu, Qiangfeng...
Although the human bladder is reported to harbor unique microbiota, our understanding of how these microbial communities interact with their human hosts is limited, mostly owing to the lack of isolates to test mechanistic hypotheses. Niche-specific bacte
Identifying pathogenic variants from the vast majority of nucleotide variation remains a challenge. We present a method named Multimodal Annotation Generated Pathogenic Impact Evaluator (MAGPIE) that predicts the pathogenicity of multi-type variants. MAG
File ID (file_id:: uuid in menifest file): This is a unique identifier assigned to each specific data file within the TCGA repository. The files could be genomic sequence data, clinical information, imaging files, etc. The file_id is used to track and reference these files in the databas...
Proteins were considered to be secreted proteins if the signal peptides were identified by two methods, SignalP 5.0 [44] and TargetP 2.0 [45], and transmembrane sequences were not identified by at least one of the methods among SignalP 5.0, TMHMM 2.0 [46], and WoLF PSORT [47]. ...