we mapped 19 duplicated genes that were shared among teleosts to the genome and found that 16 of the gene pairs mapped to distinct locations whereas the other 3 collapsed into single genes, given the high similarity among the paralogs (Supplementary Table 5). ...
T2T-YAO showed significant differences between the Chinese and European genomes. When compared with the newly released human reference genome T2T-CHM13 by the T2T Consortium in 2022, the comparison disclosed variances in 11 percent of the sequences and 5 percent of the genes. Chen Runsheng, an ...
qRT-PCR assays revealed that the expression levels of nearly all tested St14–3-3 genes were affected by drought, salt, and low-temperature stresses and that different St14–3-3 genes had different responses to these stresses. Conclusions In summary, genome-wide identification, evolutionary, and ...
Based on these mappings, the relative abundance of each CSCG is then computed and used to estimate AGS based on the proportionality principle—that is, the AGS of the community is inversely proportional to the relative abundance of each marker genes22. Finally, a weighted average AGS is ...
regard, in taxa with sustained small populations, slightly-deleterious duplicated genes and transposons will more readily become fixed by drift and consequently, these species will come to harbour larger genomes. This hypothesis thus predicts an inverse relationship between genome size and population size...
Evolutionary and comparative genomics analyses revealed thatPhytophthoraeffector genes have undergone accelerated patterns of birth and death evolution with evidence of extensive gene duplication and gene loss in the genomes ofP. infestans,P. sojae, andP. ramorum[15,18–20]. For instance, inP. infesta...
which can make up to >50% of a genome(San Miguel et al., 1996). In addition to the various blocks of repetitive DNA, many plant genomes containaccessory chromosomes, so-called B-chromosomes. These are highly condensed chromosomes usually devoid of genes and have non-Mendelian modes of inher...
With the availability of larger genotype data and genome-wide association studies (GWAS) that identify increasing numbers of genes related to BV11,12,13 and intelligence14,15,16, analysis of the shared genes and pathways has become feasible. In the current study, we utilize large-scale genetic...
Having a high-quality reference genome provides many benefits in exploitingA. mexicanusas a model species. Among the more important uses, from the standpoint of utilizing the system to understand evolutionary mechanisms, are in mapping and identifying genes responsible for phenotypic change and in unve...
(Fig.4A, R2 = 0.11598,p < 0.001). This difference may be because the functions of different phylogroups significantly differed (Fig.4B, R2 = 0.58919,p < 0.001), especially between phylogroup B2 and the other phylogroups and that the distribution of the phylogroups in ...