if (!requireNamespace("devtools", quietly = TRUE)) install.packages("devtools") devtools::install_github("jtlovell/GENESPACE") 2.5 Install R dependencies If they are not yet installed, install_github will install a few dependencies directly (ggplot2, igraph, dbscan, R.utils, parallel). How...
❝https://github.com/jtlovell/GENESPACE (https://htmlpreview.github.io/?https://github.com/jtlovell/tutorials/blob/main/riparianGuide.html) ❞ 软件安装 代码语言:javascript 代码运行次数:0 复制 Cloud Studio代码运行 if(!requireNamespace("devtools",quietly=TRUE))install.packages("devtools")devto...
https://htmlpreview.github.io/?https://github.com/jtlovell/GENESPACE/blob/master/doc/genespaceOverview.html windows系统还不能用 只能在MacOS或者在Linux系统下使用,我试试在linux下使用 首先安装orthofinder conda install -c bioconda orthofinder 安装MCScanX https://github.com/wyp1125/MCScanX git clone h...
https://github.com/jtlovell/GENESPACE/blob/master/doc/genespaceOverview.html windows系统还不能用 只能在MacOS或者在Linux系统下使用,我试试在linux下使用 首先安装orthofinder 代码语言:javascript 代码运行次数:0 运行 AI代码解释 conda install-c bioconda orthofinder 安装MCScanX https://github.com/wyp1125/MC...
git clone https://github.com/wyp1125/MCScanX.git cd MCScanX make 1. 2. 3. image.png 这里出现了三个error,但是也出现了三个可执行程序,试了一下可以运行,不知道后面会不会有影响 image.png 安装依赖的R包 conda install r-data.table r-dbscan r-R.utils r-devtools ...
devtools::install_github("SatwikAch/SpaceX") library(SpaceX)#> Loading required package: PQLseq SpaceX function Inputs The first input isGene_expression_matwhich isN×Gdataframe. HereNdenotes the number of spatial locations andGdenotes number of genes. ...
git clone https://github.com/soedinglab/spacedust.git cd spacedust mkdir build cd build cmake -DCMAKE_BUILD_TYPE=RELEASE -DCMAKE_INSTALL_PREFIX=. .. make -j make install export PATH=$(pwd)/bin/:$PATH ❗ If you want to compile spacedust on macOS, please install and use gcc ...
1Tags Code Folders and files Name Last commit message Last commit date Latest commit gdevenyi Create LICENSE Jun 14, 2020 73d1e64·Jun 14, 2020 History 6 Commits AllenBrain_coords Add scripts, input and ouput csvs and tags Apr 27, 2018 ...
(https://github.com/mwaskom/seaborn). Venn diagrams and Upsetplot were generated using matplotlib (https://github.com/matplotlib/matplotlib). Using a knowledge-based approach, a set of genes was selected for further analysis. Protein structures were modeled using in silico structure prediction tool...
Pie charts on the species phylogeny showing the percentage of concordance, percentage in the top alternative bipartition, other conflicting topologies, and uninformative genes were implemented by the python script phypartspiecharts.py (Available at https://github.com/mossmatters/phyloscripts/tree/master...