❝https://github.com/jtlovell/GENESPACE (https://htmlpreview.github.io/?https://github.com/jtlovell/tutorials/blob/main/riparianGuide.html) ❞ 软件安装 代码语言:javascript 代码运行次数:0 运行 AI代码解释 if(!requireNamespace
Future GENESPACE releases will have auxilary functions that let the user access the pan-genome by rules (e.g. contains these genes, in these regions etc.). For now, we’ll leave this work to scripting by the user. 接下来就是研究研究如何准备自己的数据 欢迎大家关注我的公众号 小明的数据...
if (!requireNamespace("devtools", quietly = TRUE)) install.packages("devtools") devtools::install_github("jtlovell/GENESPACE") library(GENESPACE) 定义软件路径 代码语言:text AI代码解释 genomeRepo <- "~/path/to/store/rawGenomes" wd <- "~/path/to/genespace/workingDirectory" path2mcscanx <-...
AI代码解释 library(GENESPACE)runwd<-file.path("./testGenespace/")make_exampleDataDir(writeDir=runwd)## 这一步会下载示例数据 gids<-c("human","chimp","rhesus")gpar<-init_genespace(genomeIDs=gids,speciesIDs=gids,versionIDs=gids,ploidy=rep(1,3),wd=runwd,gffString="gff",pepString="pep"...