Comparison of motif abundance between lineage ingroups versus outgroups was done in python with stats annotator v0.4.3 package (https://github.com/trevismd/statannotations) using T tests with Benjamini-Hochberg correction (1% FDR). Similarly, to assess motif density in genes (Supplementary Fig. ...
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According to the biased-competition theory46, when two stimuli compete for representation within a given brain region they do so in a mutually inhibitory manner. The stimulus that "wins" and becomes preferentially represented is the one that is biased either by stimulus properties or by top-down ...
in equation (2) by setting . Thearyulecommand (in Matlab and Python’s spectrum package) efficiently solves the Yule-Walker equations using Levinson Algorithm[1][2]. Once the model parameters are obtained, the AR model can be implemented as an \emph{infinte impulse response (IIR)} filter o...
Mental imagery is an important tool in the cognitive control of emotion. The present study tests the prediction that visual imagery can generate and regulate differential fear conditioning via the activation and prioritization of stimulus representations
We implement the intent parser using spaCy, an open-source, industrial-strength Natural Language Processing library written in Python and Cython. We also use custom rules defined with regular expressions to identify hexadecimal values (e.g., 0xbb), strings that fall between quotation marks, ...
The p-value and rho of the Spearman's rank correlation are indicated on the lower right side of the plots. a Results of DESeq2 without length correction. b Results of DESeq2 applying length normalization factor matrix. c Results of applying RPKM normalization and limma to call differentially...
Creating a 3D volume matrix of random data is surprisingly easy. It amounts to creating a couple of random functions, some parameters, aGriddata set, and anExportnode. Start by creating a random function for the amplitudes with 3 input arguments based on a normal, or Gaussian, distribution....
Code availability All code used for this study including a python script to predict VBC score and Bioscore from feature data is openly available at https://github.com/GMichlits/VBC-Score. An online tool for sgRNA predictions is available at www.vbc-score.org....
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