GeneMark-ETP, one of the gene finders at the core of BRAKER, is available at https://github.com/gatech-genemark/GeneMark-ETP . AUGUSTUS, the second gene finder at the core of BRAKER, is available at https://github.com/Gaius-Augustus/Augustus . GALBA, a BRAKER pipeline spin-off for usin...
BRAKER3 also outperforms other existing tools, MAKER2, Funannotate, and FINDER.The code of BRAKER3 is available on GitHub and as a ready-to-run Docker container for execution with Docker or Singularity.Overall, BRAKER3 is an accurate, easy-to-use tool for eukaryotic genome annotation.Lars ...
The software packagebedtoolsis required by GeneMark-ETP if you want to run BRAKER with both RNA-Seq and protein data. You can download bedtools fromhttps://github.com/arq5x/bedtools2/releases. Here, you can either download a precompiled versionbedtools.static.binary, e.g. wget https://gi...
AUGUSTUS, the second gene finder at the core of BRAKER, is available at https://github.com/Gaius-Augustus/Augustus . GALBA, a BRAKER pipeline spin-off for using Miniprot or GenomeThreader to generate training genes, is available at https://github.com/Gaius-Augustus/GALBA . Contents Authors...