As expected, syntenic diTPSs in both subfamilies have common ancestry. Recent tandem duplications in the TPS-c family are evident inC. americanaandS. baicalensisand contribute to lineage-specific BGC expansion (Figs.3and4). The phylogenies also highlight the more distant origins of several non-sy...
which is integrated in the package PAML v. 4.9j89. Branch and branch-site models were run for each of the haplogroups that were established by the AMOVA analysis by defining them as foreground branches in different runs. The necessary tree annotations were performed on ...
The processed Vg is subsequently deposited into developing oocytes before undergoing further biochemical modifications into vitellin that is a major source of nutrient during embryogenesis (Tiu et al., 2008; Wilder et al., 2010). Vitellogenesis in crustaceans is negatively influenced by a gonad-...
Javierre BM, Burren OS, Wilder SP, Kreuzhuber R, Hill SM, Sewitz S, et al. Lineage-specific genome architecture links enhancers and non-coding disease variants to target gene promoters. Cell. 2016;167(5):1369-1384.e19. Article CAS PubMed PubMed Central Google Scholar Cairns BR. The ...
Sox2 diverged from its putatively closest paralog Sox1 after the second round of genomic duplication within the vertebrate lineage [48], even though the entire Sox family is probably of metazoan origin [49]. In the Ensembl gene tree (Additional File5; Supplementary Figure S2), Sox2 evolution is...
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Abstract The Wnt genes represent a large family of secreted glycoprotein ligands that date back to early animal evolution. Multiple duplication events generated a set of 13 Wnt families of which 12 are preserved in protostomes. Embryonic Wnt expression patterns (Wnt-patterning) are complex, represen...
Wiebe M, Wilder P, Kelly D, Rizzino A: Isolation, characterization, and differential expression of the murine Sox-2 promoter. Gene. 2000, 246 (1-2): 383-393. 10.1016/S0378-1119(00)00086-X. CASGoogle Scholar Booth H, Holland P: Eleven daughters of NANOG. Genomics. 2004, 84 (2): ...
212 Annadana S, Beekwilder MJ, Kuipers G et al. Cloning of the chrysanthemum UEP1 promoter and comparative expression in florets and leaves of Dendranthema grandiflora. Transgenic Res 2002; 11: 437–445. 213 Sassa H, Ushijima K, Hirano H. A pistil-specific thaumatin/PR5-like protein gene ...
Nobuta K, Okrent RA, Stoutemyer M, Rodibaugh N, Kempema L, Wildermuth MC, Innes RW: The GH3 acyl adenylase family member PBS3 regulates salicylic acid-dependent defense responses in Arabidopsis. Plant Physiol. 2007, 144: 1144-1156. 10.1104/pp.107.097691. Article PubMed CAS PubMed Central...