Create a function to convert gene or protein IDsCedric Simillion
geneplottingenrichment-analysisid-converter UpdatedSep 10, 2024 R pinellolab/haystack_bio Star46 Code Issues Pull requests Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline tfsroadmapgenerna-seqmotifgene-expressionregulationepigeneticsencodecellchip-seqhotspotplasticitytranscription-...
The full name of the 10 most DE genes between PeM and BPR muscle and their functional characteristics are shown in Tables 2 and 3. Interestingly, highly upregulated genes in PeM muscle are closely associated with expression of gene and phenotypes of subclinical myopathy commonly observed in the ...
Users can directly upload data from Excel spreadsheets or csv files containing gene names into Gene Updater (https://share.streamlit.io/kuanrongchan/date-to-gene-converter/main/date_gene_tool.py). The old gene names will be automatically updated to the new gene names with Gene Updater. If ...
In all organisms, there are two major steps separating a protein-coding gene from its protein: First, the DNA on which the gene resides must be transcribed from DNA to messenger RNA (mRNA); and, second, it must be translated from mRNA to protein. RNA-coding genes must still go through ...
Alibés A, Yankilevich P, Cañada A, Diaz-Uriarte R: IDconverter and IDClight: conversion and annotation of gene and protein IDs. BMC Bioinformatics 2007, 8: 9. Article PubMed Central PubMed Google Scholar Diaz-Uriarte R, Alibés A, Morrissey ER, Cañada A, Rueda O, Neves ML: ...
Simply being able to recognize a protein name as such is just a starting point. The name needs then to be unambiguously qualified, by referring to an entry in a standard protein database, such as UniProt http://www.expasy.org/sprot/[47]. In order for that to happen, the disambiguation...
Gene expression levels in strains without (gray) and with (red) the 13 TE insertions with the most significant association according to our eQTL analysis, and for the3L_14050243_14050245_pogoinsertion with evidence of selection (last plot). The name of the TE insertions and the genomic location...
DNA and protein gel imaging your way Small footprint Plenty of bench space for your experiments 3m pixel camera Detect nanogram amounts on gels (up to 20cm x 20cm) Manual zoom Puts you in control of the camera White, UV and blue lighting options Flexibility to image fluorescent DNA and vis...
inf = temp.nameelse: inf = infile concatenate ="zcat"# define statement# doesn't use strand informationstatement ='''%(concatenate)s %(inf)s | python %(scriptsdir)s/bed2fasta.py --genome=%(genomedir)s/%(genome)s --log=%(outfile)s.log > %(outfile)s'''P.run()ifinfile.endswith...