Review ReportsVersions Notes Abstract Girth growth is an important factor in both latex and timber production of the rubber tree. In this study, we performed candidate gene association mapping for girth growth in rubber trees using intron length polymorphism markers (ILP) in identifying the candidate...
(causal probability > 0.9, as determined by the population-based fine-mapping model SuSiE23) from likely spurious eQTLs (causal probability < 0.01), which were matched for the eGene when possible (Methods). We represented each variant by its prediction difference vector (that is, evaluating the...
We estimated the metagenomic abundances of BGCs, GCFs, and GCCs by mapping the biosynthetic genes to the metagenomic reads of all samples (Methods). Among all water ecosystems and regions, rivers and wetlands exhibited the highest diversity of BGCs, GCFs, and GCCs, while hot springs from ...
In gene therapy, stem cells are modified using viral vectors to deliver the therapeutic transgene and replace functional properties since the genetic modification is stable and inherited in all cell progeny. The retrieval and mapping of the sequences flanking the virus-host DNA junctions allows the ...
point out that existing annotation databases are incomplete, that a proportion of the annotations may be imprecise or incorrect, that name space mapping (how to connect a probe sequence to a gene/protein) is a problem, and that available statistical tests are not always validated. We think ...
Mapping and quantifying mammalian transcriptomes by RNA-Seq Nat Methods, 5 (7) (2008), pp. 621-628 https://doi.org/10.1038/nmeth.1226 CrossrefView in ScopusGoogle Scholar [38] U. Nagalakshmi, Z. Wang, K. Waern, et al. The transcriptional landscape of the yeast genome defined by RNA ...
Of these, 1,167 produced polymorphic genotypes (MAF > 0.01) across the subset of 351 oysters belonging to the reference mapping families with an average genotyping call rate of > 99.4% (Additional file 1). Sex-average map Genetic data used to construct our P. maxima linkage map ...
Altering the biochemical makeup of chromatin by the incorporation of histone variants during development represents a key mechanism in regulating gene expression. The histone variant H2A.B, H2A.B.3 in mice, appeared late in evolution and is most highly e
Conditional transcriptome-wide association study for fine-mapping candidate causal genes Lu Liu Ran Yan Xiang Zhou Nature Genetics(2024) Brain tissue- and cell type-specific eQTL Mendelian randomization reveals efficacy of FADS1 and FADS2 on cognitive function ...
et al. Systematic mapping of RNA–chromatin interactions in vivo. Curr. Biol. 27, 610–612 (2017). CAS PubMed Google Scholar Bonetti, A. et al. RADICL-seq identifies general and cell type-specific principles of genome-wide RNA–chromatin interactions. Preprint at bioRxiv https://doi.org...