(d,e) Boxplots showing expressions of identified IRGs in melanoma tissue and normal skin in general (d) or its subtype (e) from Gene expression profiling interactive analysis (GEPIA). SKCM: skin cutaneous melanoma; T: tumor; N: normal; WT: wild type. Full size image Development and ...
the different expression patterns, prognostic value, and immunological value of MMPs in pancreatic ductal adenocarcinoma (PDAC) are yet to be comprehensively explored. We utilized Gene Expression Profiling Interactive Analysis (GEPIA
To circumvent these challenges, we developed STAGEs (Static andTemporalAnalysis ofGeneExpressionstudies) that provides an interactive visualisation of omics analysis outputs. Users can directly upload data created from Excel spreadsheets and use STAGEs to render volcano plots, differentially expressed genes ...
Serial analysis of gene expression (LongSAGE) was applied for gene expression profiling in seeds of oilseed rape (Brassica napus ssp. napus). The usefulness of this technique for detailed expression profiling in a non-model organism was demonstrated for the highly complex, neither fully sequenced ...
analysis toolGEPIAGene Expression Profiling Interactive AnalysisDsigDBDrug Signatures DatabaseGDAGenes-Disease AssociateDSIDisease Specificity IndexLogFCLog Fold ... AA Firouzjaei,A Mahmoudi,W Almahmeed,... - 《Pathology Research & Practice》 被引量: 0发表: 0年 Machine learning and bioinformatics to ...
In order to determine the sequences of events and the parameters influencing the interactive process, in vitro studies on bone cell culture models are used to determine biocompatibility and to investigate bone and biomaterial interactions. Osteoblastic cells (responsible for bone formation) are used ...
Expression profiling. The expression profile in the form of a heat map for (a) PePLC (b) DcPLC, and (c) AsPLC in different tissues such as leaf (L), root (R), green root tip (Gr), white part of the root (Wr), stem (S), flower bud (Fb), sepal (Sp), petal (Pt), labe...
[20]. The Search Tool for the Retrieval of Interactive Gene Database (STRING-DB) Version 9.1. (http://string-db.org/) was used to construct functional interaction networks among DEGs-encoded proteins [21]. To this end, we performed a STRING-DB multiple proteins search using the DEGs as ...
By using bootstraps that estimate inferential variance, the sleuth method and software provide fast and highly accurate differential gene expression analysis in an interactive Shiny app. Harold Pimentel , Nicolas L Bray & Lior Pachter Brief Communication | 22 May 2017 Allele-specific expression rev...
We found some genes with an expression value of “0” during the pre-processing, and we filtered out those genes with the expression of “0” in more than two-thirds of the 637 samples to reduce the noise. Following data pre-processing, we obtained expression profiling of over 50,000 gen...