Gene coexpression network analysis reveals the role of SRS genes in senescence leaf of maize (Zea mays L.)Shi-related sequence (SRS) proteins are plant-specific transcription factors that play important roles in developmental processes, including regulating hormone biosynthesis, response or signal ...
ExpressionNetworkAnalysis",StatisticalApplicationsinGeneticsandMolecularBiology:Vol. 4:No.1,Article17TechnicalReportandsoftwarecodeat: .genetics.ucla.edu/labs/horvath/CoexpressionNetwork Moredetailsonthebiologicalresultscanbefoundinthefollowingreference.
On the other hand, correlation-based gene networks are more computationally more affordable, but have not been properly extended to gene expression time-course data. We propose Temporal Gene Coexpression Network (TGCN) for the transcriptomic time-course data. The mathematical nature of TGCN is ...
Coexpression network of different treatments in rice cultivars. (a) Hierarchical cluster tree showing coexpression modules identified by WGCNA. Each leaf in the tree represents one gene. The major tree branches constitute 36 modules, labeled with different colours. (b) Hierarchical clustering of modul...
gene coexpression network analysis was carried out, and the differentially expressed genes were enriched in five and four major network modules in G7 and Z13, respectively. Further analyses showed that phytohormones, photosynthesis, phenylpropanoid biosynthesis, and flavonoid biosynthesis pathways were ...
gene co-expression network analysis with our custom made R functions. We show how to construct weighted networks using soft thresholding. Contents part A Weighted Brain Cancer Network Construction Module Detection Gene significance and intramodular connectivity Robustness analysis with respect to the soft ...
picking invertebrates such as shrimp/insects from the soft lake bottom [40].C. horeiis the most specialised fry-eater in the Tropheini with a terminal mouth andL. dardenniiis an omnivore [57]. We used weighted gene coexpression network analysis (WGCNA) to identify major coexpression modules...
Weirauch, M., Gene Coexpression Networks for the Analysis of DNA Microarray Data. 2011, 1.Weirauch MT (2011) Gene coexpression networks for the analysis of DNA microarray data. In: Dehmer M, Emmert-Streib F, Graber A, Salvador A (eds) Applied statistics for network biology: methods in ...
Colors represent the scaled (Z-scored) average expression of all genes belonging to a module in a given subpopulation. Gene coexpression network was built using weighted gene coexpression network analysis to identify gene modules. TPM, transcripts per million. b, Pathways enriched in each gene ...
http://.bepress/sagmb AGeneralFrameworkforWeightedGene Co-ExpressionNetworkAnalysis ∗ BinZhangandSteveHorvath Abstract Geneco-expressionnetworksareincreasinglyusedtoexplorethesystem-levelfunctionality ofgenes.Thenetworkconstructionisconceptuallystraightforward:nodesrepresentgenesand nodesareconnectedifthecorresponding...