DEG的KEGG(Kyoto Encyclopedia of Genes and Genomes)富集分析显示HN和CN一致(Figure 3B)。 火山图(Volcano plot)显示,IL17C在HN和CN中显著下调(Figure 3C)。 箱型图(Boxplot)显示,在癌症进展后期时,Th17细胞的丰度显著降低(Figure 3D)。 4、鉴定与癌变相关的潜在基因——Identification of the potential genes ...
box <- ggplot(df,aes(x = variable,y = log2(value),fill = variable)) + geom_boxplot() + theme_bw(base_size = 18) + theme(axis.text.x = element_text(angle = 90)) + xlab('') # 拼图 plot_grid(plotlist = list(densi,box),ncol = 2,align = 'hv') 7总结 这个geneExpressionF...
可以通过ggpubr包对表达数据进行一个可视化统计: ggboxplot(expr, x = "dataset", y = c("TP53", "PTEN", "METTL3"), combine = TRUE, color = "dataset", palette = "jco", ylab = "Expression", add = "jitter", # Add jittered points add.params = list(size = 0.1, jitter = 0.2) #...
Create gene-wise boxplot from (merged) ExpressionSet
f, Boxplot shows CTLA4 dynamic eQTLs. The average expression of the gene within each pseudotime window was stratified by genotype. Locus plot for a colocalization between a CTLA4 dynamic eQTL and a GWAS association for type 1 diabetes. Each dot represents a variant, with colors indicating their...
a, Ternary plot of present-day British–Irish populations as a three-way admixture between late Iron Age and Roman England (England LIA Roman) (n = 32), France IA (n = 26) and England EMA CNE (n = 109). b, Boxplot comparison of France IA ancestry proportions in 23 ...
The width of each box plot represents the total number of genes with best associated TNS in the given range of TNSs. The whiskers of each boxplot denote the range of the data, the circles mark outliers, and the boxes mark the quartiles above and below the median (center line). The ...
the Denisovan lineage. Note that this is a somewhat nonstandard plot of true age versus estimated age; a more standard, reversed view is given inSupplementary Fig. 33and demonstrates that the estimated ages are largely unbiased. Error bars as in the standard Tukey box plot (R boxplot ...
(Abottom panel) moments of spliced and RNA velocity integrated features generated from ten integration methods. The boxplots represent trajectory inference correlation scores (\(\mathrm {TI}_{\text {corr}}\)) for ten random root cells. Asterisk indicates the method with the highest median\(\...
The boxplots indicate gene pairs that show a significant difference in bias score. Centerline, median; box limits, first and third quartiles; whisker, 1.5× interquartile range. f,g, Correlation between the number of gene pairs with biased expression, the number of favorable loci and fiber ...