GBS-SNP-CROP(GBSSNPCallingReferenceOptionalPipeline)即:基于简化基因组测序的一个分析SNP的流程(其中参考序列是可选择的,即可以不用参考序列,流程会建立一个Mock Reference)该流程可以最大程度地利用GBS数据并在没有参考Reference的情况下执行SNP基因分型分析。 GBS-SNP-CROP用7个perl脚本建立了整个分析流程。其中用...
标签: GBS-SNP-CROP 简化基因组GBS分析流程:GBS-SNP-CROP 2021/1/12 13 评论 简化基因组测序(Reduced-Representation Ge…© 2025 Omics – Hunter 浙公网安备 33010802011761号 陕ICP备19016588号-1 邮箱:chenhao__@__evvail.com(发件请删除下划线) 站点地图 | RSS订阅 | 关于我 | 文章总览 | 友链:Bio...
Using the published reference genome of a related diploid species (A. chinensis), the reference-based version of GBS-SNP-CROP behaved similarly to TASSEL-GBS in terms of the number of SNPs called but had an improved read depth distribution and fewer genotyping errors. Our results also indicate...
在GBS SNPÇ阿灵- [R eferenceöptional P ipeline(GBS-SNP-CROP)经由的顺序的顺序执行集成了定制解析和过滤用公知的,核实生物信息学工具程序,给用户完全访问所有中间文件。 通过采用基于个体内到跨种群多态性模式对应关系的变体(SNP和插入缺失)调用的新策略,该流水线能够从测序和PCR错误中识别和区分高可信变体...
The underlying GBS-SNP-CROP pipeline allows for eight different filters: (1) mnHoDepth0 (value: 5), the minimum depth required for calling a homozygote when the alternative allele depth equals 0; (2) mnHoDepth1 (value: 20) the minimum depth required for calling a homozygote when the ...
Applications of single nucleotide polymorphisms in crop genetics. Curr Opin Plant Biol. 2002;5:94–100. Article CAS PubMed Google Scholar Hackett CA, McLean K, Bryan GJ. Linkage analysis and QTL mapping using SNP dosage data in a tetraploid potato mapping population. PLoS One. 2013;8:e63...
Crop Sci 47: 1082–1090. Google Scholar Burgueño J, de los Campos GDL, Weigel K, Crossa J . (2012). Genomic prediction of breeding values when modeling genotype × environment interaction using pedigree and dense molecular markers. Crop Sci 52: 707–719. Google Scholar Crossa J, de...
利用 Super-GBS 技术进行基因分型,建立 SNP 标记遗传图谱,采用完备区间作图法(ICIM)开展 QTL 定位.结果表明,在第 1,3,4,8,9 染色体上一共检测到 18 个 QTL,其中,与株高和节间数相关的 QTL 分别为 7 和 11 个.有 10 个主效 QTL 在多个环境中或 2 个性状中被重复检测到,其中 qPH9.1 与已知的株...
Marker-assisted selection (MAS) refers to the use of molecular markers to assist phenotypic selections in crop improvement. Several types of molecular markers, such as single nucleotide polymorphism (SNP), have been identified and effectively used in plant breeding. The application of next-generation...
Single nucleotide polymorphism genotyping using Kompetitive Allele Specific PCR (KASP): overview of the technology and its application in crop improvement Single nucleotide polymorphism (SNP) data can be obtained using one of the numerous uniplex or multiplex SNP genotyping platforms that combine a ...