nextgenusfs/funannotate latest bcde41375f71 7 weeks ago 12.6 GB 3.运行 funannotate-docker 这个时候如果运行 funannotate-docker 会报错,服务器 docker 版本太老了。 (test) [test@login ~]$ funannotate-docker unknown flag: --mount See 'docker run --help'. 解决方法,更改 funannotate-docke...
# 可能需要花一些时间,数据集太多funannotate setup -d funannotate_db --install all 配置环境变量, 在激活funannotate环境的同时,启用这部分环境变量,方法参考 #在conda环境下,进行如下配置,即可在激活环境的同时,激活这些环境变脸变量cat /home/user222/miniconda3/envs/funannotate/etc/conda/activate.d/env_vars....
Funannotate在蛋白质注释方面主要采用同源比对和结构域预测的方法。它会利用一系列已知蛋白质数据库,如Swiss-Prot和TrEMBL等,通过比对待注释序列,来识别相似的蛋白质序列,并从中获取蛋白质的功能信息。它也会预测蛋白质的结构域和功能模块,包括信号肽、跨膜结构等,从而为蛋白质的功能注释提供更多的信息。 3. 转录本...
下面是使用funannotate和Singularity进行基因组注释的一般步骤: 1. 安装Singularity:首先,确保已经安装了Singularity。你可以从官方网站或软件包管理器(如apt、yum)中获取并安装它。 2. 创建Singularity镜像:使用Singularity创建一个包含funannotate和其依赖项的镜像。你可以使用Singularity的命令行工具来完成这一步骤。下面是一...
This PR does something else (explain below) Trying to fix the following kind of error found with predict tool: [Jun 14 08:11 PM]: Mapping 557,291 proteins to genome using diamond and exonerate Traceback (most recent call last): File "/usr/local/lib/python3.8/site-packages/funannotate/aux...
echo "export TRINITY_HOME=/your/path" > /your/path/miniconda3/envs/funannotate/etc/conda/activate.d/trinity.sh echo "unset TRINITY_HOME" > /your/path/miniconda3/envs/funannotate/etc/conda/deactivate.d/trinity.sh ### データベースPATHの設定 上記メッセージの通りにコマンドを入力 PATHも...
File "/home/anaconda3/envs/funannotate/bin/funannotate", line 10, in sys.exit(main()) File "/home/anaconda3/envs/funannotate/lib/python3.9/site-packages/funannotate/funannotate.py", line 717, in main mod.main(arguments) File "/home/anaconda3/envs/funannotate/lib/python3.9/site-packages/fu...
EVM-LR；FungalTools； GeneMark-ES； BUSCO 成功的基因组分析取决于基因预测的质量。虽然真菌基因组测序...
except for a different input file previously. If you look at my installation, you will see that gmap is not installed. I have not been able to install it into the current anaconda environment despite numerous attempts; nevertheless, funannotate ran just fine until today, generating meaningful ...
Yeah, you can edit the tbl file and then run funannotate fix -- it will archive the current data and generate new output files in place. So you shouldn't need to re-run update if this was the only error. So I guess this came out of PASA then? Was this gene present in predict ou...