1). SEs have the following characteristics: (1) the degree of SE mediation is at least one order of magnitude greater than that of TEs; (2) the number of TFs bound by SEs and chromosomes related to transcriptional activity is much higher than that bound by TEs(2); (3) genes regulated...
Thus, the results of research in this area can be brought back to the original models, for instance, in the form of regularization techniques. Among other, I am planning to explore the possibility of integrating the time dimension as a new dimension into the model to improve its performance ...
The evolution of Cloud Computing into a service utility, along with the pervasive adoption of the IoT paradigm, has promoted a significant growth in the need of computational and storage services. The traditional use of cloud services, focused on the consumption of one provider, is not valid any...
but a comprehensive review of the analysis tools has not been completed yet. Here, we discuss the major steps in ATAC-seq data analysis, including pre-analysis (quality check and alignment), core analysis (peak calling), and advanced analysis (peak differential analysis and ...
model legumes, the response of plants to rhizobia is initiated by Nod factor receptors (NFRs). However, information about the function ofNFRsin peanut is still limited. In this study, we applied the CRISPR/Cas9 tool in peanut hairy root transformation system to explore the function ofNFRgenes....
A stronger upstream (US) nucleosome positioning, persistence of NFR under repression on most of the genes, sequence-independence of NFR and requirement of remodeler activities to maintain the chromatin structure in active state, are some of the observations which suggest tDNA NFRs are different ...
Furthermore, in agreement with other genomic analyses in Arabidopsis [24–26], our analysis of the H3 profiles in genes grouped by transcript levels, revealed regions with low H3 presence, "nucleosome free regions" (NFRs), identified immediately upstream of the TSS for more highly expressed ...
They provided a concise theoretical framework for the discrimination of nucleosome-bound versus nucleosome-free regions (NFRs), and iterated the observation of only a small fraction of the complete nucleosomes being well positioned. However, they did not examine whether the used patterns are under ...
of fertilizers in the form of animal waste, wood ash, or seaweed. At the beginning of the 20thcentury, two German chemists, Fritz Haber and Carl Bosch, invented a process allowing nitrogen fixation, the conversion of dinitrogen into ammonium, on an industrial scale [1,2]. The use of ...
Leguminous plants are able to form a root nodule symbiosis with nitrogen-fixing soil bacteria called rhizobia. This symbiotic association shows a high level of specificity. Beyond the specificity for the legume family, individual legume species/genotypes