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On the other hand, the quality values span a wider range of values, and when compressed they can sum up to about 70% of the total space to encode a FASTQ file [11]. Quality scores are more difficult to compress due to a larger alphabet (63-94 in original form) and intrinsically ...
The workflow of RNAlysis. Top section: a typical analysis with RNAlysis can start at any stage from raw/trimmed FASTQ files, through more processed data tables such as count matrices, differential expression tables, or any form of tabular data. Middle section: data tables can be filtered, nor...
These numbers were then put into a block of 594×30 values (this can be seen in the encoding block of Fig. 3). The first RS parity information was added to each row in the form of 119 values from the GF(47). This section was referred to as the outer block (Redundancy A in the...
Thus, finding efficient and safe methods to accelerate the accumulation of anthocyanins in postharvest blood orange fruit is of great significance for the fresh fruit market and also for the industry for juice processing. In fact, soil plastic film mulch, a form of regulated deficit irrigation (...
Cabbage Fusarium wilt (CFW) is a devastating disease caused by the soil-borne fungus Fusarium oxysporum f. sp. conglutinans (Foc). One of the optimal measures for managing CFW is the employment of tolerant/resistant cabbage varieties. However, the interp
However, PCA is designed to preserve linear structure based on eigen-decomposition of a matrix into canonical form, and as such, it is incapable of handling nonlinear structures. While tSNE emphasizes neighborhood information to reveal the local cluster structures of the data, it tends to shatter ...
This structure is the source of pluripotent cells. Pluripotent stem cells (PSCs) form cells of all germ layers but not extraembryonic structures, such as the placenta. Embryonic stem cells (ESCs) are an example. ESCs are derived from the inner cell mass of preimplantation embryos. Another ...
The knowledge-based network and the nodes and edges within the co-expression modules were combined to form a single reference network on which further analysis was applied. This was done by taking the union of nodes and edges of both networks followed by merging any multiple edges into single ...
Glycation with D-ribose induces BSA to misfold rapidly and form globular amyloid-like aggregations which play an important role in cytotoxicity to neural cells.Background Non-enzymatic glycation of proteins by reducing saccharides such as glucose (glc) and ribose (rib) leads to the formation of ...