The value of breakpoints ranges from 13 (Pattern 23 and Pattern 25) to 25 (Pattern 42) in the Eriophyidae, from 14 (Pattern 20) to 23 (Pattern 10) in the Diptilomiopidae, and from 11 (Pattern 3) to 18 (Pattern 1) in the Phytoptidae (Additional file 1: Table S2). Shared deriv...
Finally the Phylo.io [45] tool was used for the visual presentation of the phylogenetic trees. Transcription factor This page provides a search function for predicted TF and TR families in the 9 pear genomes. The search form allows users to retrieve additional TF families by entering a ...
relationship among peptide functions, respectively; (iii) it is able to stably detect the newly detected therapeutic peptide functions with limited labeled data by introducing the MCRT algorithm; and (iv) its web server is constructed, only requiring the peptide sequences in FASTA format as inputs...
and they consist of many separate strings. The possibility to ignore the topology fork-mer-based methods opens more leeway in their representation that can be exploited to reduce the resource consumption of existing and future bioinformatics tools. ...
(fold changes) |≥ 1 were considered DEGs.p-values were adjusted using the Benjamini and Hochberg method. The Fasta file was imported into Eggnog (v 2.0.1) [33] for functional annotation. Based on the annotation of gene function, we performed enriched GO and KEGG analyses of DEGs under...
In turn, DNAStringSet-objects can be readily exported as fasta-files. When using the Shiny application, the output data can be downloaded as both.csv or fasta-format. Before proceeding to wet laboratory (wet-lab) evaluation, evaluation of the final assays for the potential to form primer-...
Amphioxus AANATs are of interest in understanding the evolution of vertebrate AANAT because cephalochordates and vertebrates form a clade [17]. Accordingly, the study of the AANAT from this organism might provide new insights into the transition from the non-vertebrate members of the AANAT family ...
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Thus, we decided to use the FM-index of the human reference genome. Because a reference genome is also basic resource for every bioinformatician, this method has the collateral advantage of not requiring a separate indexed FASTA for compression instead sharing the same index for reads alignments....
[2,3,4]. It is capable of accumulating high levels of internal storage lipids in the form of triacylglycerols (TAGs) from excess carbon when other nutrients such as nitrogen, phosphorous or sulphur are limited [5,6,7]. Its natural capacity to grow on a variety of carbon sources, ...