Colorectal cancer (CRC) is one of the most commonly diagnosed cancers, posing a serious public health challenge that necessitates the development of new therapeutics, therapies, and prevention methods. Among the various therapeutic approaches, interventions involving lactic acid bacteria (LAB) as probiot...
The pie chart shows the relative abundance (%) of bacterial genera or enzymes among different groups. ArAT, aromatic amino acid aminotransferase; ID, indolepyruvate decarboxylases. Relative abundances of acyl-CoA dehydrogenase (ACD) (E) and indoleacetamide hydrolase (IAAH) (F) predicted by ...
Using scanning electron microscope, we observed the presence of bacteria in the Cor, BC, and FC (Fig. 1e), and the abundance of the ocular microbiome resembled that of the skin, but was lower than that of the gills and gut, as determined by qPCR analysis (Figure S4a). SYTO BC Green...
participants of this study were recruited as part of previous and ongoing IRB-approved studies. Out of a total of 5619 bladder isolates in our urinary bacteria collection, we selected 1050 strains for whole-genome sequencing. Some isolates came from the same participant...
A pie chart displaying the proportion of each type; B Each motif represents the base sequence; C Differential pattern diagram of six clades for the two conserved domains (AMP-binding domain signature and ACS signature motif) Full size image Analysis of duplicate genes, synteny relationships, and ...
(RNase A was not used for sample bacteria identification.) This pool of oligoribonucleotide sequences is in turn mapped into a collection of isotopic oligoribonucleotide masses. Conversely, each individual oligoribonucleotide mass may be attributed to a number of bacteria. To simulate the resolution ...
(PF) biosynthetic pathway inT. mongolicus.aComposition and location of PF-biosynthetic-pathway-related genes ofT. mongolicus. The circle plot represents the distribution of genes associated with the PF pathway in theT. mongolicusgenome. The bar chart in the upper right corner of the circle plot ...
A Performance comparison of the models using classical convolution and separable convolution. The models employing classical 3D convolution (Conv3D-based) and separable 3D convolution (SepConv3D-based) were cross-validated with identical settings. Each bar in the chart represents the mean value across...
Barchart depicting the 20 most abundant taxa in Sanger sequencing data. Cleanroom samples from each sampling campaign were pooled together to obtain a signal and marked as ‘cleanrooms’, and change room samples were marked with the room number ‘03’ Full size image Next generation sequencing ...
C Stacked chart of GM composition at the phylum level. D Heatmap of the relative abundances of the top 30 microbiota genera. E Linear discriminant analysis effect size (LEfSe) analysis between group HC and DEP/ group DEP and DEP-sertraline-treated. F ROC curve of Roseburia in predicting ...