participants of this study were recruited as part of previous and ongoing IRB-approved studies. Out of a total of 5619 bladder isolates in our urinary bacteria collection, we selected 1050 strains for whole-genome sequencing. Some isolates came from the same participant...
Colorectal cancer (CRC) is one of the most commonly diagnosed cancers, posing a serious public health challenge that necessitates the development of new therapeutics, therapies, and prevention methods. Among the various therapeutic approaches, interventions involving lactic acid bacteria (LAB) as probiot...
After retrospective analysis by the adjudication committee, 32 of these 41 samples were linked to a confirmed HAP/VAP episode and were therefore selected for the final analysis (Fig. 2). Fig. 2 Flow chart Full size image The patients characteristics are summarized in Table 2. Table 2 Patients...
C Stacked chart of GM composition at the phylum level. D Heatmap of the relative abundances of the top 30 microbiota genera. E Linear discriminant analysis effect size (LEfSe) analysis between group HC and DEP/ group DEP and DEP-sertraline-treated. F ROC curve of Roseburia in predicting ...
A Performance comparison of the models using classical convolution and separable convolution. The models employing classical 3D convolution (Conv3D-based) and separable 3D convolution (SepConv3D-based) were cross-validated with identical settings. Each bar in the chart represents the mean value across...
The β-1,3-glucanase gene is widely involved in plant development and stress defense. However, an identification and expression analysis of the grape β-1,3-glucanase gene (VviBG) family had not been conducted prior to this study. Here, 42 VviBGs were id
A pie chart displaying the proportion of each type; B Each motif represents the base sequence; C Differential pattern diagram of six clades for the two conserved domains (AMP-binding domain signature and ACS signature motif) Full size image Analysis of duplicate genes, synteny relationships, and ...
(PF) biosynthetic pathway inT. mongolicus.aComposition and location of PF-biosynthetic-pathway-related genes ofT. mongolicus. The circle plot represents the distribution of genes associated with the PF pathway in theT. mongolicusgenome. The bar chart in the upper right corner of the circle plot ...
a pie chart shows the fraction of isolates that have the trait and how many of these have the gene. If the trait data is continuous, a histogram is also displayed. These plots are updated whenever the user clicks on an orthogroup. Below the phylogenetic tree, there are two tables. The ...
Despite great progress in culture technologies [60], uncultivability for the overwhelming majority of bacteria remains a major challenge yet. However, some component species could be isolated elaborately in pure culture. Sequencing the obtained monospecific colony will provide a fraction of isolate geno...