This strategy is conceptually similar to the popular tools like BLAST [39] for sequence alignment or our previous strategy scLearn et al. for automatic cell type annotations using single-cell transcriptomic references [24, 25, 30]. In the case of SpaDo, it performs a search by measuring the...
Fig. 6 ILA promotes the microbial synthesis of IPA and IAA. A Experimental scheme to examine the role of cross-feeding (n = 4). The intestinal microbiota was depleted by 2 weeks of antibiotic administration in the drinking water, followed by oral gavage of ArAT-deficient mutant (△L....
While some previous methods also align to the virus first [97], either the software no longer appears available where specified at publication [98, 99], or they use BLAST [100, 101] instead of a faster short read aligner [102]. Unlike ViFi [58], Polyidus requires that the chimera ...
The more and smaller cells mutants of Arabidopsis thaliana identify novel roles for SQUAMOSA PROMOTER BINDING PROTEIN-LIKE genes in the control of heteroblasty. Development. 2009;136(6):955–64. Article Google Scholar Schwarz S, Grande AV, Bujdoso N, Saedler H, Huijser P. The microRNA ...
6). Shoots of plants in symbiosis with high-efficiency WSM1022 rhizobia have higher levels of N, C, Mg, P, K, and Ca (Fig. 1C). We observed a significant reduction in total Mo accumulation in these shoots in comparison to mock-inoculated plants (Fig. 1C), despite the fact that ...
, and during the second test, the building was enclosed with a blast-resistant façade. The applied blast loads were similar for both tests. During the first test, the frame responded elastically with no failure on the LFRS, while the glazed façade almost completely shattered. The blast-...
unknown were discarded. A specific sequence similarity search using the Basic Local Alignment Search Tool (Blast), available on the National Center for Biotechnology Information (NCBI) platform, was performed for the most dominant ASV (ASV00001) to assess whether or not it belonged to the already...
Sea snakes underwent a complete transition from land to sea within the last ~ 15 million years, yet they remain a conspicuous gap in molecular studies of marine adaptation in vertebrates. Here, we generate four new annotated sea snake genomes, thre
In particular, we predict the contact vector of protein structures using an artificial neural network based on position-specific scoring matrices generated by PSI-BLAST and align these predicted contact vectors. The resulting sequence alignments are assessed using two different tests: First, we assess ...
The first one, named whole-genome assembly comparison (WGAC), is a BLAST-based approach that performs an all-by-all comparison of assembled genome sequence [18]. The second one, whole-genome shotgun detection (WSSD), develops a model for distinguishing unique and duplicated sequence on the ...