Our evaluation covered three key perspectives: (1) spatial domain detection on single-cell spatial transcriptomics data, (2) spatial domain detection on spot resolution spatial transcriptomics data, and (3) TLS-like domain detection. For the first test (Fig. 2a), we can see that SpaDo ...
BLAST plus: architecture and applications. BMC Bioinformatics. 2009;10:421. Article PubMed PubMed Central Google Scholar Wu T, Hu E, Xu S, Chen M, Guo P, Dai Z, et al. clusterProfiler 4.0: A universal enrichment tool for interpreting omics data. Innovation (Camb). 2021;2:100141. ...
The suggested BB’s to use for this gun are the Umarex BB’s so that you can blast them constantly at a higher rate of 465fps with great accuracy and full blowback action as these are specially designed to give optimum performance with this gun. So, get out there and have some fun!
For each putative site, we sorted the pool of BLAST hits by subject strand (in this case, “subject” refers to our plant reference genome) to find which of the paired reads were associated with either the plus or minus strand. Because the transgene-containing end of the amplicon is closes...
BLAST2GO [75] was used to obtain the associated GO terms. The enrichment score is defined as the hypergeometric test value [76]. Whole genome duplication analysis The all-against-all BLASTP method (E value < 1e−5) was used to detect paralogous genes in pistachio, C. sinensis, ...
Phytophthora root rot caused by the oomycete Phytophthora capsici is the most devastating disease in pepper production worldwide, and current management strategies have not been effective in preventing this disease. Therefore, the use of resistant variet
Fig. 3 Map of central metabolic pathways inR. toruloidesBOT-A2. Pathways were reconstructed from genome and RNAseq data, using KEGG, SGD and BLASTp. The network includes glycolysis (pink), the pentose phosphate pathway (blue), the TCA cycle (pale yellow), lipid biosynthesis, triacylglycerol bi...
n=3, NC: Normal control Full size image Discussion IT is well established that blastema formation results from the dedifferentiation of the differentiated cell types on the amputation plane back to embryonic-like cells (Mescher 1996), but these cell types retain the memory of their origin when ...
[81,82]. Potential homologs to these proteins were identified inDesulfuromusasp. GH17 by BLAST using query proteins for NSR and NSR-like proteins from S0-reducersPyrococcus furiosusandThermovibrio ammonificansas well as Sre/Psr genes from a variety of bacterial taxa (complete output and list of...
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997;25(17):3389–402. Article CAS PubMed PubMed Central Google Scholar Tennakoon C, Sung WK. BATVI: fast, sensitive and accurate detection of virus integrations. BMC Bioinformatics. 2017;...