I am a bit confused by this - is it that the weighted estimate is used whenever there are multiple SNPs per window? This would be the case in every window, and would explain why I only have weighted Fst in the window output. In conclusion: Is there any way to retrieve unweighted Fst ...
π Fst Hardy-Weinberg平衡(这个是用的点图) 5. 更新一个XP-CLR 这个是计算群体分化的一个指标,主要是基于选择清除(Selective sweep)信息进行群体分化的计算。个人感觉比Fst更新的地方是用了多个SNP对应的等位基因频率估计染色体一段区域的分化情况,而Fst是用单个SNP对应的等位基因频率。相对来说,XP-CLR估计群体分化...
Fst指数,由F统计量演变而来。F统计量(FIS,FIT,FST)主要有三种,Fst是针对一对等位基因。 Fst的值在0-1之间,分化指数越大,两个群体间的差异越大。Fst值为0表示两个群体是随机交配的,基因型完全相似。如果Fst值为1则表示两个群体完全隔离。 计算公式 Fst=(HT-HS)/HT HS:亚群中的平均杂合度 HT:总群体中的...
Rust re-implementation of OpenFST - library for constructing, combining, optimizing, and searching weighted finite-state transducers (FSTs). A Python binding is also available. - garvys-org/rustfst
It is found possible, through weighted polynomial regression, to calculate this dependence directly from measurements of temperature and pressure on a single instrument and, thereby, to remove more than 95 percent of the mooring motion induced temperature variance. The correction of temperature for ...
CHROM BIN_START BIN_END N_VARIANTS WEIGHTED_FST MEAN_FST chr1 1 40000 79 0.178739 0.0986989 chr1 20001 60000 84 0.21267 0.143746 chr1 40001 80000 118 0.315279 0.19392 chr1 60001 100000 147 0.361274 0.215205 Pi衡量遗传多样性 Pi主要用来衡量nucleotide divergency ...
It is found possible, through weighted polynomial regression, to calculate this dependence directly from measurements of temperature and pressure on a single instrument and, thereby, to remove more than 95 percent of the mooring motion induced temperature variance. The correction of temperature for ...
Rust re-implementation of OpenFST - library for constructing, combining, optimizing, and searching weighted finite-state transducers (FSTs). A Python binding is also available. - Garvys/rustfst
It is found possible, through weighted polynomial regression, to calculate this dependence directly from measurements of temperature and pressure on a single instrument and, thereby, to remove more than 95 percent of the mooring motion induced temperature variance. The correction of temperature for ...