We used Bedtools [83] and python scripts (https://github.com/joybio/m6A-seq/tree/main/feature_annotation/) for peak annotation. GO functional annotations (GO enrichment) were performed using DAVID. Analysis of RNA-seq data Sequencing reads were trimmed and mapped to the reference genome (...
Thus, our identification of putative HGTs does not appear to be due to contamination of the mRNA pool. Additionally, of the 31 Rafflesia HGT transcripts verified from our next-generation sequencing of genomic DNA, 16 show the presence of an intron (Additional file 7: Table S2 and Additional ...
Analysis of population structure, PCA, phylogenetic tree and AMOVA Population structure was estimated using Bayesian model-based approach implemented through the STRUCTURE program version 2.2 [62]. The putative number of a subpopulation (k) in the range of k = 1 to 5 was estimated using a ...
Genome-wide analysis of the R2R3-MYB gene family in Fragaria x ananassa and its function identification during anthocyanins biosynthesis in pink-flowered strawberry. Front Plant Sci. 2021;12:702160. Article Google Scholar Naing AH, Kim CK. Roles of R2R3-MYB transcription factors in ...