fastp是一个高效的测序数据处理工具，广泛用于处理原始的高通量测序数据，如 Illumina 测序数据。它主要用...
--merged_out in the merging mode, specify the file name to store merged output, or specify --stdout to stream the merged output (string [=]) --include_unmerged in the merging mode, write the unmerged or unpaired reads to the file specified by --merge. Disabled by default. -6, --phr...
fastp使用参数 fastp: an ultra-fast all-in-one FASTQ preprocessor version 0.20.1 一个超级快速的fastq一条龙处理软件 options:-i,--in1 read1 input file name(string[=])-o,--out1 read1 output file name(string[=])-I,--in2 read2 input file name(string[=])-O,--out2 read2 output fil...
Use -S or --split_by_lines to limit the lines of each file. The last files may have smaller sizes since usually the input file cannot be perfectly divided. The actual file lines may be a little greater than the value specified by --split_by_lines since fastp reads and writes data ...
--merged_outinthe merging mode, specify the file name to store merged output, or specify --stdout to stream the merged output (string [=]) --include_unmergedinthe merging mode, write the unmerged or unpaired reads to the file specified by --merge. Disabled by default. ...
未通过质量过滤的原因主要为测序质量低或长度不足,这部分read可以通过--failed_out选项跟文件名为参数来输出。 3、仅查看数据质量 如果你想把fastp当fastqc使用也是完全可以的,通过选项--reads_to_process可以设置不对fastq文件做任何处理,仅作质量查看。
--include_unmerged in the merging mode, write the unmerged or unpaired reads to the file specified by --merge. Disabled by default. -6, --phred64 indicate the input is using phred64 scoring (it'll be converted to phred33, so the output will still be phred33) ...
Use-Sor--split_by_linesto limit the lines of each file. The last files may have smaller sizes since usually the input file cannot be perfectly divided. The actual file lines may be a little greater than the value specified by--split_by_linessincefastpreads and writes data by blocks (a...
未通过质量过滤的原因主要为测序质量低或长度不足,这部分read可以通过--failed_out选项跟文件名为参数来输出。 3、仅查看数据质量 如果你想把fastp当fastqc使用也是完全可以的,通过选项--reads_to_process可以设置不对fastq文件做任何处理,仅作质量查看。
--unpaired1 and --unpaired2 can be the same, so the unpaired read1/read2 will be written to the same single file. store the reads that fail the filters give --failed_out to specify the file name to store the failed reads. if one read failed and is written to --failed_out, its ...