Archive of FASTA-formatted files containing predicted proteins for each genomeLars, SnipenDavid, W Ussery
grepfasta.pl - Get entries from FASTA formatted file based on search in header SYNOPSIS grepfasta.pl [options] -p 'pattern' file DESCRIPTION grepfasta.plwill search for the presence ofstringin the header of a FASTA entry, and print the entry to STDOUT if a match is found, or print all...
a trivial python script that doubles input FASTA formatted sequences end on - helps deal with bisection due to circular permutation - GitHub - Zheludev/SeqDoubler: a trivial python script that doubles input FASTA formatted sequences end on - helps deal w
Sohrab P ShahDavid YM HeJessica N SawkinsJeffrey C DruceGerald QuonDrew LettGrace XY ZhengTao XuBF Francis Ouellette
Database on Demand - An online tool for the custom generation of FASTA-formatted sequence data- bases. Proteomics 2009, 9, 4421-4.Reisinger F, Martens L (2009) Database on Demand--an online tool for the custom generation of FASTA-formatted sequence data- bases. Proteomics 9(18):4421-...
(2014). FastaValidator: an open-source Java library to parse and validate FASTA formatted sequences. BMC Res. Notes 7, 365.Waldmann,J. et al. (2014) FastaValidator: an open-source Java library to parse and validate FASTA formatted sequences. BMC Res. Notes, 7, 365....
Background Advances in sequencing technologies challenge the efficient importing and validation of FASTA formatted sequence data which is still a prerequisite for most bioinformatic tools and pipelines. Comparative analysis of commonly used Bio*-frameworks (BioPerl, BioJava and Biopython) shows that their...
FASconCAT is a user-friendly software that concatenates rapidly different kinds of sequence data into one supermatrix file. Output files are either in FASTA, PHYLIP or NEXUS format and are directly loadable in phylogenetic programs like PAUP*, RAxML or M