Archive of FASTA-formatted files containing predicted proteins for each genomeLars, SnipenDavid, W Ussery
grepfasta.pl - Get entries from FASTA formatted file based on search in header SYNOPSIS grepfasta.pl [options] -p 'pattern' file DESCRIPTION grepfasta.plwill search for the presence ofstringin the header of a FASTA entry, and print the entry to STDOUT if a match is found, or print all...
Background Advances in sequencing technologies challenge the efficient importing and validation of FASTA formatted sequence data which is still a prerequisite for most bioinformatic tools and pipelines. Comparative analysis of commonly used Bio*-frameworks (BioPerl, BioJava and Biopython) shows that their...
mikemc changed the title Silva errors propagated into DADA2-formatted database by dada2:::makeTaxonomyFasta_SilvaNR() Silva missing ranks incorrectly propagated into DADA2-formatted database by dada2:::makeTaxonomyFasta_SilvaNR() Mar 10, 2021 Owner benjjneb commented Mar 10, 2021 If cross...
Sohrab P ShahDavid YM HeJessica N SawkinsJeffrey C DruceGerald QuonDrew LettGrace XY ZhengTao XuBF Francis Ouellette
Database on Demand - an online tool for the custom generation of FASTA-formatted sequence databases. Proteomics. 2009;9(18):4421-4. Epub 2009/09/03.F. Reisinger, L. Martens, Database on Demand -- an online tool for the custom generation of FASTA-formatted sequence databases, Proteomics 9...
FASconCAT is a user-friendly software that concatenates rapidly different kinds of sequence data into one supermatrix file. Output files are either in FASTA, PHYLIP or NEXUS format and are directly loadable in phylogenetic programs like PAUP*, RAxML or M