FANTOM5 CAGE peaks for human in hg19Imad, Abugessaisa
在该项目的第三个阶段,采用了CAGE-seq这一技术手段来准确研究不同转录本的转录起始位点TSS, 示意如下 CAGE技术可以区分不同转录本异构体的起始位点。建立在准确的TSS位点的基础上,进一步对启动子,增强子等转录调控区域进行研究和分析。 除了常规的蛋白编码基因和转录调控外,该项目还在lncRNA, miRNA等非编码RNA,即ncRN...
增强子活化过程 注:CAGE-seq(cap analysis of gene expression),结合mRNA加帽位点鉴定和高通量测序的手段,可以高通量地鉴定整个细胞内mRNA的转录起始位点,从而获得准确的启动子信息和5’UTR信息。 研究目的 (1)描述癌症中增强子表达的全局模式; (2)了解增强子激活与其它基因组畸变以及相关基础机制的关系; (3)鉴定定...
In the FANTOM5 project, transcription initiation events across the human and mouse genomes were mapped at a single base-pair resolution and their frequencies were monitored by CAGE (Cap Analysis of Gene Expression) coupled with single-molecule sequencing. Approximately three thousands of samples, consi...
在该项目的第三个阶段,采用了CAGE-seq这一技术手段来准确研究不同转录本的转录起始位点TSS, 示意如下 CAGE技术可以区分不同转录本异构体的起始位点。建立在准确的TSS位点的基础上,进一步对启动子,增强子等转录调控区域进行研究和分析。 除了常规的蛋白编码基因和转录调控外,该项目还在lncRNA, miRNA等非编码RNA,即ncRN...
In the FANTOM5 project, transcription initiation events across the human and mouse genomes were mapped at a single base-pair resolution and their frequencies were monitored by CAGE (Cap Analysis of Gene Expression) coupled with single-molecule sequencing. Approximately three thousands of samples, consi...
CAGE技术可以区分不同转录本异构体的起始位点。建立在准确的TSS位点的基础上,进一步对启动子,增强子等转录调控区域进行研究和分析。 除了常规的蛋白编码基因和转录调控外,该项目还在lncRNA, miRNA等非编码RNA,即ncRNA领域进行了研究。相关结果和数据面向全世界开放的,可以在官网下载得...
FANTOM5 CAGE profiles of human and mouse samples Shuhei Noguchi Takahiro Arakawa Yoshihide Hayashizaki Data DescriptorOpen Access29 Aug 2017Scientific Data Research & Analysis Distinct transcriptional responses of lymphatic endothelial cells to VEGFR-3 and VEGFR-2 stimulation ...
List of FANTOM5 mouse CAGE samplesFANTOMhumanSamples
Synth Lead PR-A 0024 XMod2 JazzGt 87 92 24 38:Synth PolyKey PR-A 0091 Cage’s Ring Lead 87 92 91 34:Synth Lead PR-A 0025 Shine Pad 87 92 25 36:Synth Pad/Str PR-A 0092 Sync Nativity 87 92 92 34:Synth Lead PR-A 0026 Ambien 87 92 26 36:Synth Pad/Str PR-A 0093 Ode to...