Based on this, the contribution of each homoeologous gene pair to fiber quality was grouped into the following four models: (1) favorable homoeologous pairs, with both favorable genotype and expression; (2) only favorable genotype with unfavorable expression of its homoeologous gene; (3) only ...
We grouped cells into sets with high (above the median) or low (below the median) expression of specific genes such as NFKB1 and performed virtual 4C analysis. For each set of cells, we combined contact maps to generate a pseudobulk contact matrix. Contacts with the gene locus were extrac...
When the input is scRNA-seq or bulk-sorted cell type-specific profiles (e.g., FACS-purified), EcoTyper performs the following major steps for discovering cell states and ecotypes: Gene filtering: This step filters out genes that do not show cell type specificity. Cell state discovery: This...
If the report server is in native mode, the path must start with slash. (rsInvalidItemPath) After reinstalling SSRS got error Failed to load expression host assembly. Details: Could not load file or assembly 'SrsResources, Culture=neutral' or one of its dependencies. The system cannot find ...
The correlated subquery with a MAX() will be implemented by going to the subquery and building a working table which is grouped by emp_id. Then for each group, you will keep track of the maximum and save it for the final result. However, the NOT EXISTS version will find the first row...
Pidal B, Yan LL, Fu DL, Zhang FQ, Tranquilli G, Dubcovsky J: The CArG-Box Located Upstream from the Transcriptional Start of Wheat Vernalization Gene VRN1 Is Not Necessary for the Vernalization Response. Journal of Heredity. 2009, 100 (3): 355-364. 10.1093/jhered/esp002. Article CAS ...
The promoter sequence conservation was computed for a window of 2000 bp upstream and 500 bp downstream of the transcription start site (TSS) of each gene. A gene TSS is defined as the most 5′ base of the gene. PhastCons scores [25] in this window are averaged from the bigwig file wit...
We defined the promoter regions as 1,000 nucleotides upstream from the transcription start site. We used a moving window approach (500 nt window moving 5 nt at a time) to compute the CpG frequency and classified the CpG frequency as 'high' when at least one 500-nucleotide-window contained ...
Pidal B, Yan LL, Fu DL, Zhang FQ, Tranquilli G, Dubcovsky J: The CArG-Box Located Upstream from the Transcriptional Start of Wheat Vernalization Gene VRN1 Is Not Necessary for the Vernalization Response. Journal of Heredity. 2009, 100 (3): 355-364. 10.1093/jhered/esp002. Article CAS ...
The Pregnancy-associated glycoproteins (PAGs) belong to a large family of aspartic peptidases expressed exclusively in the placenta of species in the Artiodactyla order. In cattle, the PAG gene family is comprised of at least 22 transcribed genes, as wel