specific metabolites. The number of lost genes in different morphotypes is provided in the tree diagram.h, Syntenic gene families were separated into three groups corresponding to the numbers of homoeologs (single-, two- or three-copy) retained from theBrassicamesohexaploidization event. The percent...
a, Phylogenetic tree and genotypes of fiber-related loci in 332 cotton landraces and 3,220 cultivars. b, Trait-associated loci were grouped into four categories according to their favorable allele frequency in the modern cultivar population. c, Number of loci in four categories with different shar...
Both results seem to provide the visually understandable hierarchical tree structure that can be widely used by biologists. This attempt, here we would demonstrate, let us confirm cluster data agreed with past biological findings reflected in GO terms, and notice new findings about aging-related ...
Several of the hexosaminidases, including the mammalian homologs, form a sub-branch of the phylogenetic tree (group IV), indicating an ancient divergence from the NAG family. TcNAG1 falls within NAG group I that also contains the well-characterized NAG from M. sexta, which was used in the ...
Tree of sequence relatedness for the six AAA protomers in midasin from humans, yeast and GiardiaAsterisks indicate nodes supported with a bootstrap probability of 95% or better, plus signs indicate nodes with probability of 75–95%. The tree was calculated from the multiple alignment in Fig.3...
Phylogenetic and gene structure analysis The evolutionary relationships of BBX proteins amongS. spontaneum,A. thaliana,O. sativa,S. bicolor, andZ. mayswere determined using neighbor-joining (NJ) phylogenetic analysis. Based on the phylogenetic tree topology and a previous report inArabidopsis[3,4],...
3.3. Gene structure, motif patterns and chromosome location of TLPs Different combinations of exons and introns can lead to diverse gene function. To explore the structure diversity of CmTLP genes, the distribution of exon-intron structure was analyzed and mapped in the phylogenetic tree. As shown...
by Trinity containing a very well conserved motif to be assigned as RBH if they are less than half the size of the longest sequence in the cluster. Our dataset contained a total of 6289 RBH clusters that were further used to reconstruct the phylogenetic tree. To do so, gene sequences ...
A phylogenetic tree was constructed to analyze the relationship between the ARF gene family in rice, Arabidopsis, and cultivated alfalfa (Fig. 2). The ARF gene family was divided into four large clades, where clade I contained the most MsARF (52) genes and was closely related to AtARF10/16...
Phylogenetic tree showing the evolutionary relationship among the assembled N. clavipes spidroins using N-terminal sequences (∼130 residues) from each putative gene product (bootstrap values provided in Supplementary Fig. 3a). Circular symbols denote the silk class—with putative functional application...