The root microbiota is critical for agricultural yield, with growth-promoting bacteria able to solubilise phosphate, produce plant growth hormones, antagonise pathogens and fix N2. Plants control the microorganisms in their immediate environment and this
Given the wealth of the ChIP-seq data available for a wide range of the TFs in various cell types, we propose that gene expression modeling can be done using ChIP-seq “signatures” directly, effectively skipping the motif finding and TFBS prediction steps. We present xcore, an R package ...
Retrotransposons are highly prevalent in most animals and account for more than 35% of the human genome. However, the prevalence, biogenesis mechanism and
The analysis was implemented in the R programming Language. Data and Code are available at https://github.com/hguzzi/DiabetesAging. More data are available upon reasonable request. Heatmaps used in this article have been generated by using the on line software http://www.heatmapper.ca/...
Finally, these values of the GhSOD candidates were extracted and plotted using MySQL and the R programming language, respectively. Plant materials and stress treatments Upland cotton TM-1 (provided by State Key Laboratory of Crop Biology, Shandong Agricultural University) was employed in this study....
The package forproteomicslabelfreequantificationprolfqua(read : prolevka) evolved from a set of scripts and functions written in the R programming language to visualize and analyze mass spectrometric data, and some of them are still in R packages such as quantable, protViz or imsbInfer. For com...
Here, we report the sex-specific and left-right (L-R) asymmetric expression pattern of Bmp7 in the chicken gonadogenesis. Bmp7 was L-R asymmetrically expressed at the beginning of genital ridge formation. After sexual differentiation occurred, sex-specific expression pattern of Bmp7 was ...
However, purely a graphical interface was established due to the complication in the proposed relationship [81]. The uniqueness of a genetic programming (GP), is that it discards the former established relation to develop the model. Gene expression programming (GEP) is the extended form of GP ...
FDR as calculated above was created by calculating the matrix of correlation scores between all the significant gene sets, taking the Euclidean distance between the rows of this matrix, and then hierarchically clustering these distances using the complete linkage algorithm in R’s hclust function52. ...
researchers. We used data from the TCGA database DLBC (diffuse large B-cell lymphoma) project and R (version 4.1.1) (Basic R package) to analyze CXCL expression in tumor stages and judged the diagnostic value of CXCLs in patients with DLBCL. P-value < 0.05 were considered significant...