输入基因,选择物种之后,点击differential expression,即可得到差异结果。 差异标准为 log2fold-change > 1 and adjustedp-value < 0.05 咱们举个例子,比如搜索基因ITGB6在物种人中的疾病差异表达 1.输入ITGB6,species选择Homo sapiens,点击search。 2.选择defferential expression 3.搜索结果如下 其中红色的色块代表高...
AtGenExpress表达图谱
To obtain a gene expression atlas in the wing disc, we employed single cell RNA sequencing (scRNA-seq) and developed a method for analyzing scRNA-seq data based on gene expression correlations rather than cell mapping. This enables us to compute expression maps for all detected genes in the ...
a unified catalog and molecular characterization of the heterogeneous cell types and, specifically, neuronal subtypes in this brain region are still lacking. Here, we present an integrated reference atlas, ‘HypoMap,’ of the murine hypothalamus, consisting of ...
Expression Atlas 网页https://www.ebi.ac.uk/gxa/home 文档https://www.ebi.ac.uk/gxa/help/index.html
1 Gene expression atlas in fiber development. a, Proportion of gene expression variance explained by differences among accessions. Orange band represents 95% confidence interval for the fitted regression. b, Proportion of gene expression variance explained by differences among developmental timepoints. ...
A spatial expression atlas of the adult human proximal small intestine Article 07 August 2024 Introduction Many tissues such as the liver, the intestine, and the kidney, are composed of structured anatomical units1. Spatially varying concentrations of oxygen, nutrients, and morphogens along these un...
Recently, a number of web interfaces have been generated to facilitate single gene queries of in-house data (ImmGen Gene Skyline (1), Gene-expression Atlas (2), Leukemia Gene Atlas (3) and Differentiation Map (2)) or curated, compiled and processed data sets (HemaEx- plorer (3), Gene...
FANTOM Consortium and the RIKEN PMI and CLST (DGT).A promoter-level mammalian expression atlas.Nature507, 462–470 (2014). ArticleGoogle Scholar Heinz, S., Romanoski, C. E., Benner, C. & Glass, C. K. The selection and function of cell type-specific enhancers.Nat. Rev. Mol. Cell Bi...
Gateways to the FANTOM5 promoter level mammalian expression atlas. Genome Biol. 16, 22 (2015). Article CAS PubMed PubMed Central Google Scholar Andersson, R. et al. An atlas of active enhancers across human cell types and tissues. Nature 507, 455–461 (2014). Article ADS CAS PubMed ...