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The 'Fastq File' selection will need to be in the appropriate file structure (seeDada Implement Inputin the DBTCShiny ReadMe). Move to the location of your downloaded and extractedtutorial files. Once there we will make use of the A-Dada folder and use one of the two options either Bidir...
FastQFormatType formatType = this.FormatType; using (StreamReader reader = stream.OpenRead()) { while (reader.Peek() != -1) { IQualitativeSequence seq = ParseOne(reader, formatType); if (seq != null) { yield return seq; } } } } 0 10. Example Project: EDDiscovery Source File: ...
From source file:fi.aalto.seqpig.io.FastqStorer.java @Override public void checkSchema(ResourceSchema s) throws IOException { allFastqFieldNames = new HashMap<String, Integer>(); String[] fieldNames = s.fieldNames(); for (int i = 0; i < fieldNames.length; i++) { //System.out.println...
基于安全考虑,Gitee 建议 配置并使用私人令牌 替代登录密码进行克隆、推送等操作 Username for 'https://gitee.com': userName Password for 'https://userName@gitee.com': # 私人令牌 master 分支(1) 管理 管理 master react-component-example / package-lock.json package-lock.json 198.81 KB ...
fastq@^1.6.0, fastq@^1.6.1: version "1.13.0" resolved "https://registry.yarnpkg.com/fastq/-/fastq-1.13.0.tgz#616760f88a7526bdfc596b7cab8c18938c36b98c" integrity sha512-YpkpUnK8od0o1hmeSc7UUs/eB/vIPWJYjKck2QKIzAf71Vm1AAQ3EbuZB3g2JIy+pg+ERD0vqI79KyZiB2e2Nw== dependenci...
综上,整个Snakefile为: SAMPLES = ["A", "B"] rule all: input: "plots/quals.svg" rule bwa_map: input: "data/genome.fa", "data/samples/{sample}.fastq" output: "mapped_reads/{sample}.bam" shell: "bwa mem {input} | samtools view -Sb - > {output}" rule samtools_sort: input: ...
Emerging methods of massive sequencing that allow for rapid re-sequencing of entire genomes at comparably low cost are changing the way biological questions are addressed in many domains. Here we propose a novel method to compare two genomes (genome-to-genome comparison). We used this method to...
/** * Split a fasta / fastq file by (a) readlength and (b) the maximum number of * entries per file. This will output the files that are written to stdout * @throws IOException error reading / writing files. *//* w w w . j a va 2 s . co m*/ @Override public void execut...
Emerging methods of massive sequencing that allow for rapid re-sequencing of entire genomes at comparably low cost are changing the way biological questions are addressed in many domains. Here we propose a novel method to compare two genomes (genome-to-genome comparison). We used this method to...