BioLiP: a semi-manually curated database for biologically relevant ligand–protein interactions. Nucleic Acids Res. 41, D1096–D1103 (2012). Article PubMed PubMed Central Google Scholar Volpato, V., Adelfio, A. & Pollastri, G. Accurate prediction of protein enzymatic class by N-to-1 ...
We develop a novel database Alpha&ESMhFolds which allows the direct comparison of AlphaFold2 and ESMFold predicted models for 42,942 proteins of the Reference Human Proteome, and when available, their comparison with 2,900 directly associated PDB structures with at least a structure to sequence ...
For each protein, the Alpha&ESMhFolds database [9] provides the per-residue pLDDT of the AlphaFold2 and ESMFold models (a self-assessed measure by both methods of the reliability of the predicted model [17]), as well as the TM-score between the two models (a metric to estimate the ...