Similarly, one could use the MSA Transformer: python predict.py \ --model-location esm_msa1b_t12_100M_UR50S \ --sequence HPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRK...
ESMFoldesmfold_v1()PDB + UR50End-to-end single sequence 3D structure predictor (Nov 2022 update). ESM-MSA-1besm_msa1b_t12_100M_UR50S()UR50 + MSAMSA Transformer language model. Can be used to extract embeddings from an MSA. Enables SOTA inference of structure. Released withRao et al...
Publish as fair-esm 0.3.1 4年前 extract.py actually need .clone() not .contiguous() - the latter only sometimes c… 4年前 hubconf.py add esm_msa1_t12_100M_UR50S to hubconf.py 4年前 pyproject.toml populating repo 5年前 setup.py ...
| | ESM-MSA-1b| `esm_msa1b_t12_100M_UR50S()` | UR50 + MSA | MSA Transformer language model. Can be used to extract embeddings from an MSA. Enables SOTA inference of structure. Released with [Rao et al. 2021](https://www.biorxiv.org/content/10.1101/2021.02.12.430858v2) (ICML'2...
ESM-MSA-1b esm_msa1b_t12_100M_UR50S() UR50 + MSA MSA Transformer language model. Can be used to extract embeddings from an MSA. Enables SOTA inference of structure. Released with Rao et al. 2021 (ICML'21 version, June 2021). ESM-1v esm1v_t33_650M_UR90S_1() ... esm1v_t33...
ESM-MSA-1besm_msa1b_t12_100M_UR50S()UR50 + MSAMSA Transformer language model. Can be used to extract embeddings from an MSA. Enables SOTA inference of structure. Released withRao et al. 2021(ICML'21 version, June 2021). ESM-1vesm1v_t33_650M_UR90S_1()...esm1v_t33_650M_UR90...
ESM-MSA-1b esm_msa1b_t12_100M_UR50S() UR50 + MSA MSA Transformer language model. Can be used to extract embeddings from an MSA. Enables SOTA inference of structure. Released with Rao et al. 2021 (ICML'21 version, June 2021). ESM-1v esm1v_t33_650M_UR90S_1() ... esm1v_t33...
ESM-MSA-1besm_msa1b_t12_100M_UR50S()UR50 + MSAMSA Transformer language model. Can be used to extract embeddings from an MSA. Enables SOTA inference of structure. Released withRao et al. 2021(ICML'21 version, June 2021). ESM-1vesm1v_t33_650M_UR90S_1()...esm1v_t33_650M_UR90...
ESM-MSA-1besm_msa1b_t12_100M_UR50S()UR50 + MSAMSA Transformer language model. Can be used to extract embeddings from an MSA. Enables SOTA inference of structure. Released withRao et al. 2021(ICML'21 version, June 2021). ESM-1vesm1v_t33_650M_UR90S_1()...esm1v_t33_650M_UR90...
ESMFoldesmfold_v1()PDB + UR50End-to-end single sequence 3D structure predictor (Nov 2022 update). ESM-MSA-1besm_msa1b_t12_100M_UR50S()UR50 + MSAMSA Transformer language model. Can be used to extract embeddings from an MSA. Enables SOTA inference of structure. Released withRao et al...