针对你遇到的错误“error in library(org.hs.eg.db) : there is no package called ‘org.hs.eg.db’”,我将按照提供的tips逐一进行解答: 确认'org.hs.eg.db'包是否存在: 在R中,org.hs.eg.db包通常用于基因注释,它属于Bioconductor项目的一部分,而不是CRAN。因此,首先需要确认你正在尝试加载的包名是否...
Therefore I recommend to update your completeBioconductorinstallation (to version3.19); in a fresh R session run:BiocManager::install(version = "3.19") > library(clusterProfiler) > library(org.Hs.eg.db) > > data(geneList, package="DOSE") > gene <- names(geneList)[abs(geneList) > 2] ...
library not found for lgfortran And I install gfortrain manually from github and set the linker flag to correspond path such as below in ~/.R/Makevar as doc said. also you can make a soft link ln -s /usr/local/gfortran /opt/gfortran FLIBS = -L/opt/gfortran/lib/gcc/aarch64-app...
[BioC] Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db'; RS-DBI driver -database locked 来自 stat.ethz.ch 喜欢 0 阅读量: 34 作者: M Mudaliar 收藏 引用 批量引用 报错 分享 全部来源 求助全文 stat.ethz.ch 站内活动 ...
/Library/Frameworks/Python.framework/Versions/3.6/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin Yarn version: 1.22.4 Node version: 14.0.0 Platform: darwin x64 Trace: Error: getaddrinfo ENOTFOUND registry.npm.taobao.org at GetAddrInfoReqWrap.onlookup [as oncomplete] (dns...
>library(org.Hs.eg.db)Error:package or namespace load failedfor‘org.Hs.eg.db’:.onLoad failedinloadNamespace()for'org.Hs.eg.db',details:call:l$contains error:$operatorisinvalidforatomic vectors 同样的问题,参考 https://support.bioconductor.org/p/9136329/ ...
Error: ENOENT: no such file or directory, copyfile '/Users/penn/Library/Caches/Yarn/v6/npm-cliui-6.0.0-511d702c0c4e41ca156d7d0e96021f23e13225b1-integrity/node_modules/cliui/CHANGELOG.md' -> '/Users/penn/Workspace/GitHub/kityminder-editor/node_modules/browser-sync/node_modules/cliui/CHANG...
# 选择mouse的基因组进行注释及ID转化啥的,如果是人的,另有R包library(clusterProfiler)library(org.Mm.eg.db)library(org.Hs.eg.db)tmp<-bitr(group_g$gene,fromType=genetype,#"SYMBOL""ENSEMBL"toType="ENTREZID",OrgDb=OrgDb)de_gene_cluster<-merge(tmp,group_g,by.x=genetype,by.y="gene")table...
> library(clusterProfiler) > data(gcSample) > > ## First apply gofilter to a single list of input genes. > ## Doesn't work with ont=ALL, only when a specific root category is defined > > yy <- enrichGO(gcSample[[1]], 'org.Hs.eg.db', ont="ALL", pvalueCutoff=0.05) ...
> library(KEGG.db) Error in library(KEGG.db) : 不存在叫‘KEGG.db’这个名字的程辑包 Looking forward to your reply! nina-hahncommentedJun 4, 2024 Dear all, I have the same problem. My ClusterProfiler Version should be uptodate. How can I check whether the automatic download has worked?