BDL to 2.074, BDL to 0.573, BDL to 4.086, BDL to 0.404, and BDL to 3.937 µg L−1, respectively (Table6). The average ranking of abundance dominance was Mo (1.066 ± 1.065 µg L−1) > Ni (0.744 ± 0.673 µg L−1) > Pb (0.337...
At the bottom, all genes in the human genome are ranked by decreasing average expression in the scRNA-seq dataset. Only genes detected in at least 5% of the cells (dark gray) were considered in the differential expression analyses. Non tested genes (light gray) include both genes not ...
Spearman rank correlation tests the association between either two rank variables or one ranked and one measurement variable. The rela- tionship identifies whether the variables covary (the vari- able increases/decreases when the other variable's value changes). Sicat et al. Mobile DNA (2022...
The presented ecological risk indicator (RI) of hazardous metals, initially proposed by Hakanson69, is an approach for determining the risk connected with an abundance of HM in an ecosystem. As Xie point out, this score takes into account characteristics such as heavy metal concentrations, kinds,...
We examined FS1-1 in more detail because deletion of this sequence reduced GATA3 levels by 28% (log2 MFI ratio = −0.478) at day 3 after transfection in Th2 cells (Figures 3D–3F) and this sequence is directly within FS1, the top-ranked prediction from the high-throughput Jurkat scree...
Genes are ranked by integrated significance of the four classes of CRMs. Cancer genes shown in boldface letters were also identified in the ActiveDriverWGS analysis of individual CRMs. (C) Significant co-occurrence of mutations in FMREs and protein-coding driver genes. Venn diagrams show pairs ...
To assess the consistency of our scoring metric, we ordered the 8mers by their score, and examined the relationship between score and the enrichment values we observed in each of the five GFP+ sub-populations (Fig. 4b, Additional file 10). As expected, lowly ranked sequences are enriched ...
Among the ten elements for which sequence-based models were available from deltaSVM, DeepSEA, the top 10th percentile JASPAR predictions and FunSeq2 scores still performed best in predicting absolute effect size. The absolute deltaSVM models ranked 7th out of 25 measures and were most similar to...
(gray) were considered in the analysis. Ranked MRE-score distribution across the miR-184 MRE network (white dots) (bottom). Underlying UNS values (first to last quartiles) are shown with their sequencing depth (dot size) and spatial distribution (greenandgray). Bar plot reflects total UDP ...
To characterize the genes showing similar patterns of promoter accessibility and gene expression, we ranked genes based on their cumulative promoter ATAC-seq signal z-score and their RNA count z-score in each tissue and plotted RNA-seq scores against ATAC-seq z-scores (Fig. 2B). Similar calcul...