SPINE: SParse eIgengene NEtwork Linking Gene Expression Clusters in Dehalococcoides mccartyi to Perturbations in Experimental Conditionsdoi:10.1371/journal.pone.0118404We present a statistical model designed to identify the effect of experimental perturbations on the aggregate behavior of the transcriptome ...
(2007) Eigengene networks for studying the relationships 2 between co-expression modules. BMC Syst Biol 1: 54. 10.1186/1752-0509-1-54.Langfelder P, Horvath S (2007) Eigengene networks for studying the relationships between co-expression modules. BMC Syst Biol 1: 54....
iterativeWGCNA provides a Python-wrapped extension for the R programWeighted Gene Correlation Network Analysis(WGCNA) that improves the robustness of network-based classifications (modules) inferred from whole-transcriptome gene expression datasets.
1,https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/Tutorials/ 2,A General Framework for Weighted Gene Co-Expression Network Analysis, Stat Appl Genet Mol Biol. "Statistical applications in genetics and molecular biology.") 2005;4:Article17. Epub 2005 Aug 12...
Module eigengene significance for co-expression modules.Simone, de JongMarco, P. M. BoksTova, F. FullerEric, StrengmanEsther, JansonCarolien, G. F. de KovelAnil, P. S. OriNancy, ViFlip, MulderJan, Dirk Blom
Gene expression datatumor classificationindependent component analysisBayesian sum ruleclassifier committee learningThis paper presents a tumor classification approach by using eigengene and support vector machine (SVM) based classifier committee learning (CCL) algorithm. In this method, first, multiple sample...
ExpressionQTL identified with the expression values of genes in the modules or the eigengene value of the respective module.Siriluck PonsuksiliPuntita SiengdeeYang DuNares TrakooljulEduard MuraniManfred SchwerinKlaus Wimmers
Input (3.9 MB) folder Data Sources arrow_drop_down Gene expression dataset (Golub et al.) calendar_view_week actual.csv calendar_view_week data_set_ALL_AML_independent.csv calendar_view_week data_set_ALL_AML_train.csv