EFFICIENT ALGORITHMS AND DATA STRUCTURES FOR VLSI CADBySEONGHUN CHOA DISSERTATION PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OFDOCTOR OF PHILOSOPHY UNIVERSITY OF FLORIDA 1996ACKNOWLEDGMENTSMy heartfelt appreciation goes to my ...
Section 2 gives a brief introduction to the concept of the centroid of an IT2 FS and the structures of the optimal solutions. Section 3 shows the proposed binary algorithms and some theoretical analyses. Section 4 provides complexity comparisons of the proposed binary algorithms with the KM ...
[5–13]), and pushing the development and usage of time and space efficient algorithms and data structures for k-mer counting and indexing (e.g. [14–18]). Although the matching of contiguous k-mers is largely used in sequence analysis, the use of not consecutive matches, i.e. spaced...
In particular, both algorithms run in O(|V||E|) time, where V is the set of nodes and E is the set of edges in the network. Table 1. Summary of the computational results obtained in this article. The complexity results, except for group betweenness centrality, concern computing the ...
Skof total lengthm, find the suffix-prefix match for each of thek(k- 1) ordered pairs of strings. We present an algorithm that solves the problem inO(m + k2) time, for any fixed alphabet. Since the size of the input isO(m) and the size of the output isO(k2) this solution is ...
We define an independent system39 and ξ-dependent system, and we present diverse experimental results on algorithms and models. Networked MDP We consider a system with n agents as a graph. Specifically, n agents coexist in an undirected and stationary graph \({{{\mathcal{G}}}=({{{\math...
data-efficient methods and systematizes them into four categories. Specifically, the survey covers solution strategies that handle data-efficiency by (i) using non-supervised algorithms that are, by nature, more data-efficient, by (ii) creating artificially more data, by (iii) transferring ...
GATE has several limitations. First, similar to other mixed model methods for genetic association tests, the computation time required for the algorithms to converge in step 1 can vary among different phenotypes and study samples because of the difference in heritability and the extent of sample rel...
{E}}}| \log (| {{{\mathcal{E}}}| ))\) (see the Code Availability for an implementation, and the Supplementary Note 7 in the Supplementary Information, SI, for further details; we also note that efficient algorithms have been proposed in the context of bipartite graphs23). Fig. 1:...
Recent advances in single-cell technologies and integration algorithms make it possible to construct comprehensive reference atlases encompassing many donors, studies, disease states, and sequencing platforms. Much like mapping sequencing reads to a refe