/!\ VERY IMPORTANT:run dnaPipeTE from its installation folder, otherwise the dependant scripts won't run. This advice is important especially if you run it into a computing cluster/server, ask first your job to move to the install folder before executing the python command /!\ ...
It's just a simple idea of how I would handle physical laws on a disconnected spacetime: My idea would be to make physics set dependant. Instead of coordinates I would use sets for the gauge constraints. On some set we would have more physical degrees of freedom than on it's subsets....